forked from drieslab/Giotto
-
Notifications
You must be signed in to change notification settings - Fork 4
71 lines (60 loc) · 2.05 KB
/
R-CMD-check.yaml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches:
- 'ci-unittest'
- 'suite' # run workflow on push to branch
- 'suite_dev'
pull_request:
branches:
- 'suite'
- 'suite_dev'
name: R-CMD-check
jobs:
R-CMD-check:
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
strategy:
fail-fast: false
matrix:
config: # matrix of system runners to run workflow on
- {os: macOS-latest, r: 'release'}
- {os: windows-latest, r: 'release'}
# - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}
- {os: ubuntu-latest, r: 'release'}
- {os: ubuntu-latest, r: 'oldrel-1'}
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes
steps:
# remove vignettes dir
- name: Remove vignettes dir
run: rm -rf 'vignettes/'
shell: bash
# checkout repo for workflow access
- uses: actions/checkout@v2
# setup R
- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}
use-public-rspm: true
# setup dependencies
- uses: r-lib/actions/setup-r-dependencies@v2
env:
_R_CHECK_FORCE_SUGGESTS: false
_R_CHECK_RD_XREFS: false
with:
dependencies: '"hard"' # do not use suggested dependencies
extra-packages: any::rcmdcheck, any::testthat
# run R CMD check
- uses: r-lib/actions/check-r-package@v2
with:
upload-snapshots: true
error-on: '"error"' # workflow errors on error only, can change to include warnings
# show testthat output for ease of access
- name: Show testthat output
if: always()
run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
shell: bash