How to incorporate the information of base pairing probability into FARFAR2

[TakumiOtagaki]

Thank you for maintaining and continuously improving this incredible tool. I truly appreciate all the hard work that goes into making Rosetta so versatile and powerful.

I have a question regarding the use of base-pair probability matrices in the farfar2 fragment assembly protocol. I am interested in incorporating such information into the assembly process. Could you guide me on how this could be achieved, or point me to relevant resources or examples?

Thank you very much for your time and support. I look forward to any advice you can provide.