DESCRIPTION

Package: poem
Title: POpulation-based Evaluation Metrics
Version: 0.99.4
Authors@R: c(
    person("Siyuan", "Luo", email="roseluosy@gmail.com", role=c("cre","aut"), comment=c(ORCID="0009-0007-6404-3244")),
    person("Pierre-Luc", "Germain", email="pierre-luc.germain@hest.ethz.ch", role=c("aut","ctb"),
           comment=c(ORCID="0000-0003-3418-4218")))
Description: Implements a set of (mostly external) evaluation metrics for comparing partitions, 
  fuzzy partitions, for evaluating the segregation of classes/clusters in embeddings or graphs, etc.
  Also includes metrics for comparing spatial data to ground truth labels and spatially visualizing 
  errors.
BugReports: https://github.com/RoseYuan/poem/issues
License: GPL (>= 3)
URL: https://roseyuan.github.io/poem/
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Depends:
    R (>= 4.0)
Imports:
    aricode,
    BiocNeighbors,
    BiocParallel,
    bluster,
    clevr,
    clue,
    cluster,
    elsa,
    fclust,
    igraph,
    Matrix,
    mclustcomp,
    methods,
    sp,
    spdep,
    stats,
    utils
Suggests: 
    testthat (>= 3.0.0),
    BiocStyle,
    knitr,
    DT,
    dplyr,
    kableExtra,
    scico,
    cowplot,
    ggnetwork,
    ggplot2,
    tidyr,
    SpatialExperiment,
    STexampleData
VignetteBuilder: knitr
biocViews: DimensionReduction, Clustering, GraphAndNetwork, Spatial
Config/testthat/edition: 3