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DESCRIPTION
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DESCRIPTION
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Package: RUBIC
Type: Package
Title: Recurrent DNA copy number break detection to identify driver
aberrations
Version: 1.0.2
Date: 2015-09-03
Author: Ewald van Dyk (NKI), Nicola Bonzanni (eNPicom), Alvise Trevisan
(eNPicom)
Maintainer: Lodewyk Wessels <[email protected]>
Description: RUBIC detects recurrent copy number aberrations using copy number
breaks, rather than recurrently amplified or deleted regions. This allows for a
vastly simplified approach as recursive peak splitting procedures and repeated
re-estimation of the background model are avoided. Furthermore, the false
discovery rate is controlled on the level of called regions, rather than at the
probe level.
License: Apache License (== 2.0)
Imports: data.table (>= 1.9.4), pracma, digest, ggplot2, grid, gtable,
grDevices, methods
Suggests: testthat, R.matlab
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2015-11-26 15:34:37 UTC; Nicola