From 2ee80b52894c2350e260150b449425867416c574 Mon Sep 17 00:00:00 2001 From: Benjamin Poldrack Date: Mon, 11 Jun 2018 16:53:08 +0200 Subject: [PATCH] Correct copy pasted solution for datalad-run + minor typo --- _episodes/03-01-reproin.md | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/_episodes/03-01-reproin.md b/_episodes/03-01-reproin.md index a967290..bb9802c 100644 --- a/_episodes/03-01-reproin.md +++ b/_episodes/03-01-reproin.md @@ -234,8 +234,9 @@ information. > command executions. > > > ## Solution -> > It is sufficient to prefix the original command line call with -> > `datalad containers-run -m ""`. +> > Prefix the original command line call with +> > `datalad run -m "" --input --output ` and +> > replace those files in the original command by `{inputs}` and `{outputs}` respectively. > > ~~~ > > % datalad run -m "Import stimulation events" \ > > --input inputs/rawdata/events.tsv \ @@ -271,7 +272,7 @@ applied when we prepared the BIDS dataset: the complete capture of all inputs, computational environments, code, and outputs. Importantly, we will conduct our analysis in a new dataset. The raw BIDS -dataset is suitable for many different analysis than can all use that dataset +dataset is suitable for many different analysis that can all use that dataset as input. In order to avoid wasteful duplication and to improve the modularity of our data structures, we will merely use the BIDS dataset as an input, but we will *not* modify it in any way.