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ensure FSL 6.0.6 installation works #524
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I'd be happy to work on it. This is what's available through the new installer located at:
> python3 fslinstaller.py -h
FSL installer version: 3.5.0
Press CTRL+C at any time to cancel installation
usage: fslinstaller.py [-h] [-v] [-d DESTDIR] [-o] [-l] [-n] [-s] [-m] [-V FSLVERSION]
options:
-h, --help show this help message and exit
-v, --version Print installer version number and exit
-d DESTDIR, --dest DESTDIR
Install FSL into this folder (default: /Users/johndoe/fsl)
-o, --overwrite Delete existing destination directory if it exists, without asking
-l, --listversions List available FSL versions and exit
-n, --no_env Do not modify your shell or MATLAB configuration (implies --no_shell and --no_matlab). When running the installer script as the root user, the root shell profile is never modified.
-s, --no_shell Do not modify your shell configuration
-m, --no_matlab Do not modify your MATLAB configuration
-V FSLVERSION, --fslversion FSLVERSION
Install this specific version of FSL
~/Downloads via 🐍 v3.10.10 ❯ python3 fslinstaller.py -l
FSL installer version: 3.5.0
Press CTRL+C at any time to cancel installation
Installation log file: /var/folders/m3/r24ql8bj2h9_g1d970f9mr40000w73/T/fslinstaller_caon1_mb.log
Available FSL versions:
6.0.6
linux-64 https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.0.6_linux-64.yml
macos-64 https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.0.6_macos-64.yml
6.0.6.1
macos-64 https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.0.6.1_macos-64.yml
linux-64 https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.0.6.1_linux-64.yml
6.0.6.2
macos-64 https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.0.6.2_macos-64.yml
linux-64 https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.0.6.2_linux-64.yml
6.0.6.3
macos-64 https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.0.6.3_macos-64.yml
linux-64 https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.0.6.3_linux-64.yml
macos-M1 https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.0.6.3_macos-M1.yml
6.0.6.4
macos-64 https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.0.6.4_macos-64.yml
linux-64 https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.0.6.4_linux-64.yml
macos-M1 https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.0.6.4_macos-M1.ym |
I was able to generate an image with FSL 6.0.6.4 🥳 PR to follow soon. |
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fsl 6.0.6 utilitizes a new python installer script. while we do not use the installer, we should verify that the installation works the way we expect.
related to #523
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