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After having used the v1 for a long time, I coud not retrieve the CNVs after installing DECoN v2.
I first corrected the script IdentifyFailures.R as mention in the issue #40.
but in the next script makeCNVcalls.R there is actually the same issue.
Ligne 69:
colnames(ExomeCount)[1:length(sample.names)+4]=sample.names
it should be
colnames(ExomeCount)[1:length(sample.names)+5]=sample.names
Otherwise all the samples / CNV are offsets.
It would be great to fix both of these issues in the git.
The text was updated successfully, but these errors were encountered:
After having used the v1 for a long time, I coud not retrieve the CNVs after installing DECoN v2.
I first corrected the script IdentifyFailures.R as mention in the issue #40.
but in the next script makeCNVcalls.R there is actually the same issue.
Ligne 69:
colnames(ExomeCount)[1:length(sample.names)+4]=sample.names
it should be
colnames(ExomeCount)[1:length(sample.names)+5]=sample.names
Otherwise all the samples / CNV are offsets.
It would be great to fix both of these issues in the git.
The text was updated successfully, but these errors were encountered: