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CNV offsets by one in makeCNVcalls. #44

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wcarre opened this issue Mar 23, 2023 · 1 comment
Open

CNV offsets by one in makeCNVcalls. #44

wcarre opened this issue Mar 23, 2023 · 1 comment

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@wcarre
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wcarre commented Mar 23, 2023

After having used the v1 for a long time, I coud not retrieve the CNVs after installing DECoN v2.

I first corrected the script IdentifyFailures.R as mention in the issue #40.
but in the next script makeCNVcalls.R there is actually the same issue.
Ligne 69:
colnames(ExomeCount)[1:length(sample.names)+4]=sample.names
it should be
colnames(ExomeCount)[1:length(sample.names)+5]=sample.names

Otherwise all the samples / CNV are offsets.

It would be great to fix both of these issues in the git.

@thomaslin0426
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Thanks you discover! Now I can get the right output of test dataset.

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