Merge pull request #20 from dnwillia23/master

Updated MultQC extract script and removed problem file
RTIInternational · Oct 18, 2023 · 41e057e · 41e057e
2 parents 3f394ce + c5a693f
commit 41e057e
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diff --git a/multiqc_extract/v1.0/.gitignore b/multiqc_extract/v1.0/.gitignore
diff --git a/multiqc_extract/v1.0/unzip_extract_stats.R b/multiqc_extract/v1.0/unzip_extract_stats.R
@@ -1,6 +1,10 @@
 library(jsonlite)
 
-zip_files <- list.files(path = ".", pattern = "\\.zip")
+zip_files <- list.files(path = ".", pattern = "multiqc_data\\.zip")
+
+if(length(zip_files)==0){
+  stop("No MultiQC ZIP files found. Exiting")
+}
 
 for (zip_file in zip_files){
   output_dir_name <- "output_dir"