From 22c691bd372496f801b426d78639bc80c5268523 Mon Sep 17 00:00:00 2001 From: Nathan Gaddis Date: Wed, 30 Oct 2024 18:24:12 +0000 Subject: [PATCH] Fixed bug in assigning wf name in batch_extract_gvcf_variants --- t1dgrs2_pipeline/v2.0/Dockerfile | 1 - t1dgrs2_pipeline/v2.0/scripts/batch_extract_gvcf_variants.py | 2 +- 2 files changed, 1 insertion(+), 2 deletions(-) diff --git a/t1dgrs2_pipeline/v2.0/Dockerfile b/t1dgrs2_pipeline/v2.0/Dockerfile index 9e54050..61730d1 100644 --- a/t1dgrs2_pipeline/v2.0/Dockerfile +++ b/t1dgrs2_pipeline/v2.0/Dockerfile @@ -83,4 +83,3 @@ WORKDIR /data RUN chown -R docker:staff /data ENTRYPOINT [ "/opt/entrypoint.sh" ] - diff --git a/t1dgrs2_pipeline/v2.0/scripts/batch_extract_gvcf_variants.py b/t1dgrs2_pipeline/v2.0/scripts/batch_extract_gvcf_variants.py index 9e110b6..9c29b61 100644 --- a/t1dgrs2_pipeline/v2.0/scripts/batch_extract_gvcf_variants.py +++ b/t1dgrs2_pipeline/v2.0/scripts/batch_extract_gvcf_variants.py @@ -170,7 +170,7 @@ def get_running_workflows(): json.dump(wf_arguments, f) # Submit the workflow for the current file - generate_name = sample_id.replace('_', '') + "-" + generate_name = sample_id.lower().replace('_', '') + "-" workflow = { "namespace": "early-check-rs-1", "serverDryRun": False,