Fixed bug in assigning wf name in batch_extract_gvcf_variants

RTIInternational · Oct 30, 2024 · 22c691b · 22c691b
1 parent 399b4ae
commit 22c691b
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diff --git a/t1dgrs2_pipeline/v2.0/Dockerfile b/t1dgrs2_pipeline/v2.0/Dockerfile
@@ -83,4 +83,3 @@ WORKDIR /data
 RUN chown -R docker:staff /data
 
 ENTRYPOINT [ "/opt/entrypoint.sh" ]
-
diff --git a/t1dgrs2_pipeline/v2.0/scripts/batch_extract_gvcf_variants.py b/t1dgrs2_pipeline/v2.0/scripts/batch_extract_gvcf_variants.py
@@ -170,7 +170,7 @@ def get_running_workflows():
             json.dump(wf_arguments, f)
 
         # Submit the workflow for the current file
-        generate_name = sample_id.replace('_', '') + "-"
+        generate_name = sample_id.lower().replace('_', '') + "-"
         workflow = {
             "namespace": "early-check-rs-1",
             "serverDryRun": False,