Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Fix CI #194

Closed
hechth opened this issue Apr 14, 2023 · 0 comments · Fixed by #195
Closed

Fix CI #194

hechth opened this issue Apr 14, 2023 · 0 comments · Fixed by #195

Comments

@hechth
Copy link
Member

hechth commented Apr 14, 2023

The problem seems to be related to the ICU package and library being loaded on the runner. See: conda-forge/r-stringi-feedstock#18

Run conda activate recetox-aplcms
* installing *source* package ‘recetox.aplcms’ ...
** using non-staged installation
** R
** data
** tests
** byte-compile and prepare package for lazy loading
Error: package or namespace load failed for ‘stringr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/usr/share/miniconda/envs/recetox-aplcms/lib/R/library/stringi/libs/stringi.so':
  libicui[18](https://github.com/RECETOX/recetox-aplcms/actions/runs/4692943768/jobs/8319291699?pr=193#step:19:19)n.so.58: cannot open shared object file: No such file or directory
Execution halted
ERROR: lazy loading failed for package ‘recetox.aplcms’
* removing ‘/tmp/RtmpjkHVkV/R_LIBS1da8682a371a/recetox.aplcms’
Error in file(con, "r") : cannot open the connection
Calls: <Anonymous> -> package_coverage -> add_hooks -> readLines -> file
In addition: Warning messages:
1: In utils::install.packages(repos = NULL, lib = install_path, pkg$path,  :
  installation of package ‘/home/runner/work/recetox-aplcms/recetox-aplcms’ had non-zero exit status
2: In file(con, "r") :
  cannot open file '/tmp/RtmpjkHVkV/R_LIBS1da8682a371a/recetox.aplcms/R/recetox.aplcms': No such file or directory
Execution halted
Error: Process completed with exit code 1.
@hechth hechth linked a pull request Apr 14, 2023 that will close this issue
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging a pull request may close this issue.

1 participant