Merge pull request #230 from RECETOX/hechth/issue229

Re-enable parallelism in feature.align.R
RECETOX · Oct 30, 2024 · 8ec24bc · 8ec24bc
2 parents 6e3ac2e + 3131194
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -4,6 +4,10 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [dev] - unreleased
+### Changed
+- re-enabled parallelism in alignment step [#230](https://github.com/RECETOX/recetox-aplcms/pull/230)
+
 ## [0.13.3] - 2024-09-16
 ### Changed
 - fixed not working eic splitting code [#226](https://github.com/RECETOX/recetox-aplcms/pull/226)

diff --git a/R/feature.align.R b/R/feature.align.R
@@ -215,7 +215,7 @@ create_aligned_feature_table <- function(features_table,
   # retention time alignment
   aligned_features <- foreach::foreach(
     i = seq_along(sel.labels), .combine = "comb", .multicombine = TRUE
-  ) %do% {
+  ) %dopar% {
     rows <- create_features_from_cluster(
       dplyr::filter(features_table, cluster == sel.labels[i]),
       mz_tol_relative,