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dom0-updates: move PackageKit cache refresh to GUI handling
PackageKit is used only by GUI updaters, refresh its cache only then. Since PackageKit daemon do not read dnf.conf, it doesn't know the right repository location, so try to access network, which results in timeouts. But at the same time, it invalidate previous cache, which is what we need. Do not delay every qubes-dom0-update call by pkcon call.
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