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Execution Issues in Mojo - Local Builds #17
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@mmcky Can you please provide the steps to reproduce this? It would be helpful to debug. |
Just running
I have |
Thanks @mmcky. I'll try and reproduce the same. |
Hmm, I am unable to produce this locally, see the logs that I get by doing this locally: Logs
% jb clean ./ --all
% jb build ./
Running Jupyter-Book v0.15.1
Source Folder: /Users/kpl/repos/project.lecture-mojo
Config Path: /Users/kpl/repos/project.lecture-mojo/_config.yml
Output Path: /Users/kpl/repos/project.lecture-mojo/_build/html
Running Sphinx v5.0.2
making output directory... done
[etoc] Changing master_doc to 'intro'
myst v0.18.1: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions=['colon_fence', 'dollarmath', 'linkify', 'substitution', 'tasklist'], disable_syntax=[], all_links_external=False, url_schemes=['mailto', 'http', 'https'], ref_domains=None, highlight_code_blocks=True, number_code_blocks=[], title_to_header=False, heading_anchors=None, heading_slug_func=None, footnote_transition=True, words_per_minute=200, sub_delimiters=('{', '}'), linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area')
myst-nb v0.17.2: NbParserConfig(custom_formats={}, metadata_key='mystnb', cell_metadata_key='mystnb', kernel_rgx_aliases={}, execution_mode='cache', execution_cache_path='', execution_excludepatterns=[], execution_timeout=600, execution_in_temp=False, execution_allow_errors=False, execution_raise_on_error=False, execution_show_tb=False, merge_streams=False, render_plugin='default', remove_code_source=False, remove_code_outputs=False, code_prompt_show='Show code cell {type}', code_prompt_hide='Hide code cell {type}', number_source_lines=False, output_stderr='show', render_text_lexer='myst-ansi', render_error_lexer='ipythontb', render_image_options={}, render_figure_options={}, render_markdown_format='commonmark', output_folder='build', append_css=True, metadata_to_fm=False)
Using jupyter-cache at: /Users/kpl/repos/project.lecture-mojo/_build/.jupyter_cache
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 6 source files that are out of date
updating environment: [new config] 6 added, 0 changed, 0 removed
/Users/kpl/repos/project.lecture-mojo/applications/shortest_paths.md: Executing notebook using local CWD [mystnb]
[4008:36136:20231212,200253.859650:ERROR directory_reader_posix.cc:42] opendir /Users/kpl/.modular/crashdb/attachments/2c70c68f-1c92-43d0-83ed-a6f7c5307037: No such file or directory (2)
/Users/kpl/repos/project.lecture-mojo/applications/wealth_distribution.md: Executing notebook using local CWD [mystnb]
/Users/kpl/repos/project.lecture-mojo/examples/matmul_comparison.ipynb: Executing notebook using local CWD [mystnb]
/Users/kpl/repos/project.lecture-mojo/intro.md: Executing notebook using local CWD [mystnb]
/Users/kpl/repos/project.lecture-mojo/intro.md: Executed notebook in 1.01 seconds [mystnb]
/Users/kpl/repos/project.lecture-mojo/intro.md: Cached executed notebook: ID=1 [mystnb]
/Users/kpl/repos/project.lecture-mojo/tutorial/mojo_demo.md: Executing notebook using local CWD [mystnb]
/Users/kpl/repos/project.lecture-mojo/applications/shortest_paths.md: WARNING: Executing notebook failed: CellExecutionError [mystnb.exec]
/Users/kpl/repos/project.lecture-mojo/applications/shortest_paths.md: WARNING: Notebook exception traceback saved in: /Users/kpl/repos/project.lecture-mojo/_build/html/reports/applications/shortest_paths.err.log [mystnb.exec]
/Users/kpl/repos/project.lecture-mojo/applications/wealth_distribution.md: WARNING: Executing notebook failed: CellExecutionError [mystnb.exec]
/Users/kpl/repos/project.lecture-mojo/applications/wealth_distribution.md: WARNING: Notebook exception traceback saved in: /Users/kpl/repos/project.lecture-mojo/_build/html/reports/applications/wealth_distribution.err.log [mystnb.exec]
/Users/kpl/repos/project.lecture-mojo/examples/matmul_comparison.ipynb: WARNING: Executing notebook failed: CellExecutionError [mystnb.exec]
/Users/kpl/repos/project.lecture-mojo/examples/matmul_comparison.ipynb: WARNING: Notebook exception traceback saved in: /Users/kpl/repos/project.lecture-mojo/_build/html/reports/examples/matmul_comparison.err.log [mystnb.exec]
/Users/kpl/repos/project.lecture-mojo/tutorial/mojo_demo.md: WARNING: Executing notebook failed: CellExecutionError [mystnb.exec]
/Users/kpl/repos/project.lecture-mojo/tutorial/mojo_demo.md: WARNING: Notebook exception traceback saved in: /Users/kpl/repos/project.lecture-mojo/_build/html/reports/tutorial/mojo_demo.err.log [mystnb.exec]
looking for now-outdated files... none found
pickling environment... done
checking consistency... /Users/kpl/repos/project.lecture-mojo/README.md: WARNING: document isn't included in any toctree
/Users/kpl/repos/project.lecture-mojo/examples/matmul_comparison.ipynb: WARNING: document isn't included in any toctree
done
preparing documents... WARNING: unsupported theme option 'dark_logo' given
done
writing output... [100%] tutorial/mojo_demo
/Users/kpl/repos/project.lecture-mojo/applications/shortest_paths.md:22: WARNING: Pygments lexer name 'mojo' is not known
/Users/kpl/repos/project.lecture-mojo/applications/shortest_paths.md:32: WARNING: Pygments lexer name 'mojo' is not known
/Users/kpl/repos/project.lecture-mojo/applications/shortest_paths.md:109: WARNING: Pygments lexer name 'mojo' is not known
/Users/kpl/repos/project.lecture-mojo/applications/shortest_paths.md:125: WARNING: Pygments lexer name 'mojo' is not known
/Users/kpl/repos/project.lecture-mojo/applications/shortest_paths.md:140: WARNING: Pygments lexer name 'mojo' is not known
/Users/kpl/repos/project.lecture-mojo/applications/shortest_paths.md:151: WARNING: Pygments lexer name 'mojo' is not known
/Users/kpl/repos/project.lecture-mojo/applications/shortest_paths.md:170: WARNING: Pygments lexer name 'mojo' is not known
/Users/kpl/repos/project.lecture-mojo/applications/wealth_distribution.md:21: WARNING: Pygments lexer name 'mojo' is not known
/Users/kpl/repos/project.lecture-mojo/applications/wealth_distribution.md:34: WARNING: Pygments lexer name 'mojo' is not known
/Users/kpl/repos/project.lecture-mojo/applications/wealth_distribution.md:54: WARNING: Pygments lexer name 'mojo' is not known
/Users/kpl/repos/project.lecture-mojo/applications/wealth_distribution.md:99: WARNING: Pygments lexer name 'mojo' is not known
/Users/kpl/repos/project.lecture-mojo/applications/wealth_distribution.md:143: WARNING: Pygments lexer name 'mojo' is not known
/Users/kpl/repos/project.lecture-mojo/applications/wealth_distribution.md:165: WARNING: Pygments lexer name 'mojo' is not known
/Users/kpl/repos/project.lecture-mojo/examples/matmul_comparison.ipynb:10002: WARNING: Pygments lexer name 'mojo' is not known
/Users/kpl/repos/project.lecture-mojo/examples/matmul_comparison.ipynb:20002: WARNING: Pygments lexer name 'mojo' is not known
/Users/kpl/repos/project.lecture-mojo/tutorial/mojo_demo.md:29: WARNING: Pygments lexer name 'mojo' is not known
/Users/kpl/repos/project.lecture-mojo/tutorial/mojo_demo.md:54: WARNING: Pygments lexer name 'mojo' is not known
/Users/kpl/repos/project.lecture-mojo/tutorial/mojo_demo.md:66: WARNING: Pygments lexer name 'mojo' is not known
/Users/kpl/repos/project.lecture-mojo/tutorial/mojo_demo.md:89: WARNING: Pygments lexer name 'mojo' is not known
/Users/kpl/repos/project.lecture-mojo/tutorial/mojo_demo.md:108: WARNING: Pygments lexer name 'mojo' is not known
/Users/kpl/repos/project.lecture-mojo/tutorial/mojo_demo.md:120: WARNING: Pygments lexer name 'mojo' is not known
/Users/kpl/repos/project.lecture-mojo/tutorial/mojo_demo.md:150: WARNING: Pygments lexer name 'mojo' is not known
/Users/kpl/repos/project.lecture-mojo/tutorial/mojo_demo.md:163: WARNING: Pygments lexer name 'mojo' is not known
generating indices... genindex done
writing additional pages... search done
copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
[etoc] missing index.html written as redirect to 'intro.html'
build succeeded, 34 warnings.
The HTML pages are in _build/html.
===============================================================================
Finished generating HTML for book.
Your book's HTML pages are here:
_build/html/
You can look at your book by opening this file in a browser:
_build/html/index.html
Or paste this line directly into your browser bar:
file:///Users/kpl/repos/project.lecture-mojo/_build/html/index.html
=============================================================================== Checking out the logs for CellExecutionError reason
% cat /Users/kpl/repos/project.lecture-mojo/_build/html/reports/applications/shortest_paths.err.log
Traceback (most recent call last):
File "/Users/kpl/mambaforge/envs/qe/lib/python3.10/site-packages/jupyter_cache/executors/utils.py", line 58, in single_nb_execution
executenb(
File "/Users/kpl/mambaforge/envs/qe/lib/python3.10/site-packages/nbclient/client.py", line 1305, in execute
return NotebookClient(nb=nb, resources=resources, km=km, **kwargs).execute()
File "/Users/kpl/mambaforge/envs/qe/lib/python3.10/site-packages/jupyter_core/utils/__init__.py", line 166, in wrapped
return loop.run_until_complete(inner)
File "/Users/kpl/mambaforge/envs/qe/lib/python3.10/asyncio/base_events.py", line 649, in run_until_complete
return future.result()
File "/Users/kpl/mambaforge/envs/qe/lib/python3.10/site-packages/nbclient/client.py", line 705, in async_execute
await self.async_execute_cell(
File "/Users/kpl/mambaforge/envs/qe/lib/python3.10/site-packages/nbclient/client.py", line 1058, in async_execute_cell
await self._check_raise_for_error(cell, cell_index, exec_reply)
File "/Users/kpl/mambaforge/envs/qe/lib/python3.10/site-packages/nbclient/client.py", line 914, in _check_raise_for_error
raise CellExecutionError.from_cell_and_msg(cell, exec_reply_content)
nbclient.exceptions.CellExecutionError: An error occurred while executing the following cell:
------------------
from utils.list import Dim
from memory import memset_zero
from random import rand
from math import min, abs
from time import now
------------------
----- stdout -----
Fontconfig warning: ignoring UTF-8: not a valid region tag
----- stderr -----
error: Execution was interrupted, reason: internal c++ exception breakpoint(-5)..
The process has been left at the point where it was interrupted, use "thread return -x" to return to the state before expression evaluation.
------------------ May the reason of the failure that you are getting is due to versions mis-match. I am using the following versions: % conda list | grep jupyter
jupyter-book 0.15.1 pypi_0 pypi
jupyter-cache 0.6.1 pypi_0 pypi
jupyter-client 8.3.1 pypi_0 pypi
jupyter-core 5.3.1 pypi_0 pypi
jupyter-events 0.7.0 pypi_0 pypi
jupyter-server 2.7.3 pypi_0 pypi
jupyter-server-mathjax 0.2.6 pypi_0 pypi
jupyter-server-terminals 0.4.4 pypi_0 pypi
jupyterlab-pygments 0.2.2 pypi_0 pypi
sphinx-jupyterbook-latex 0.5.2 pypi_0 pypi
sphinx-tojupyter 0.3.0 pypi_0 pypi
% mojo --version
mojo 0.5.0 (6e50a738) |
@kp992 it looks like none of your notebooks are executing successfully via That error was associated with not being able to find the |
@kp992 I am using |
Please let me know once you get this running again on your local. |
Do you mean to try the same with |
Hi @mmcky, I noticed a very strange issue. I converted the |
@kp992 I am running into some local issues with
mojo
buildsand
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