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Question about enviroment problems when compiling pyo3 #1105

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PosoSAgapo opened this issue Aug 14, 2020 · 15 comments
Closed

Question about enviroment problems when compiling pyo3 #1105

PosoSAgapo opened this issue Aug 14, 2020 · 15 comments
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@PosoSAgapo
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PosoSAgapo commented Aug 14, 2020

🌍 Environment

  • Your operating system and versio:OSX Catalina
  • Your python version: 3.7.6
  • How did you install python (e.g. apt or pyenv)? Did you use a virtualenv?:installed through anaconda
  • Your Rust version (rustc --version): rustc 1.46.0-nightly (346aec9b0 2020-07-11)
  • Your PyO3 version:0.11.1
  • Have you tried using latest PyO3 master (replace version = "0.x.y" with git = "https://github.com/PyO3/pyo3")?:No

💥 Reproducing

Firstly I meet an encoding problem that was described in this issue , which shows setting a PYTHONHOME and PYTHONPATH enviroment variable could solve this problem.
Then I use where python in shell to show the python directory and then add it to the .zshrc and sourced .zshrc after I edited this file, now my enviroment variable setting is like below:

COLORFGBG='7;0'
CONDA_EXE=/opt/anaconda3/bin/conda
CONDA_PYTHON_EXE=/opt/anaconda3/bin/python
CONDA_SHLVL=0
HOME=/Users/chenbowen
PATH=/Library/PostgreSQL/12/bin/:/Library/PostgreSQL/12/bin/:/Library/PostgreSQL/12/bin/:/Library/PostgreSQL/12/bin/:/opt/anaconda3/condabin:/Library/PostgreSQL/12/bin/:/Users/chenbowen/.cargo/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin
PYTHONHOME=/opt/anaconda3/bin/
PYTHONPATH=/opt/anaconda3/bin/python
SHELL=/bin/zsh
SHLVL=1
TERM=xterm-256color
TERM_PROGRAM=iTerm.app
TERM_PROGRAM_VERSION=3.3.12
TERM_SESSION_ID=w0t0p2:B6B4E9AF-EC25-4E89-BA79-47E45AC88D0D
TMPDIR=/var/folders/ql/nyyhlh8s3wn5f7g7623wkppc0000gn/T/
XPC_FLAGS=0x0
XPC_SERVICE_NAME=0
_CE_CONDA=''
_CE_M=''

Then encoding problem was solved but any another problem occured when I was using sudo cargo +nightly build:

error: linking with cc failed: exit code: 1
= note: "cc" "-m64" "-L" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.140i76tvprhi8724.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.141c50u9cbyjuzrz.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.15k44jvacwnpyohf.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.1e8qmcakbzj7kqf2.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.1htfksy4nzig3vhq.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.22xjn16u6a3okpgc.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.2h03t0wv2g1cda3f.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.2q5h9k0ob4g97ll1.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.34d6lk85be6lbol8.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.3baxicgouixw4jm.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.3deoqsechef1rfri.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.3ov05jl1druft6ti.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.3tanyi723f8d6qxp.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.3v54iupt5uc7iuuu.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.3vgdw8p4zqojlohw.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.47rtwdzmq8vrfb9e.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.4chae59e0sf56wnu.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.4x243lze9pb2imcl.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.54oyjxhls9ctawng.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.55g1cxy8pwkjxv8e.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.5dra31keg7bdjydk.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.9qhwtfyoncmqliy.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.q6qwsi9yn9jch2g.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.uoao78mf7hb130b.rcgu.o" "-o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.31ofrb0z424v72al.rcgu.o" "-Wl,-dead_strip" "-nodefaultlibs" "-L" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps" "-L" "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.7/lib" "-L" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/libpyo3-f07d758f48232337.rlib" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/libparking_lot-bcfd76020e0653e3.rlib" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/libparking_lot_core-bba55b27ed443046.rlib" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/libsmallvec-ff409f469bbbdf5e.rlib" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/libcfg_if-99a1c55ab49a4433.rlib" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/liblock_api-0764144bcd8559cd.rlib" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/libscopeguard-fa0a164027cbd96c.rlib" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/libinstant-af8bca8197487044.rlib" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/liblibc-2a7c42407beac51f.rlib" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/libunindent-ebcf874e879c5218.rlib" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/libpaste-e880ea718b2c44be.rlib" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/libinventory-60f4ffd535ab00d3.rlib" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/libindoc-3d350b3c5125e618.rlib" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib/libstd-473bfa6649025a67.rlib" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib/libpanic_unwind-8e1c1c2f3b88fa26.rlib" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib/libhashbrown-73b777ace327e6f8.rlib" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib/librustc_std_workspace_alloc-b666c9c30cd05ed8.rlib" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib/libbacktrace-13799bdb379be2ce.rlib" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib/libbacktrace_sys-63abd5899e0d7e6b.rlib" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib/librustc_demangle-1b07ed0286619776.rlib" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib/libunwind-89188c3232051162.rlib" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib/libcfg_if-caece456e5f78fce.rlib" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib/liblibc-628a35dcde52dad2.rlib" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib/liballoc-a0fac8d46f97ec7a.rlib" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib/librustc_std_workspace_core-ef5998790eeac756.rlib" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib/libcore-3fe78a4d2924ae43.rlib" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib/libcompiler_builtins-e166c2d904273814.rlib" "-lpython3.7m" "-lSystem" "-lresolv" "-lc" "-lm"
= note: ld: warning: directory not found for option '-L/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.7/lib'
ld: library not found for -lpython3.7m
clang: error: linker command failed with exit code 1 (use -v to see invocation)

But the error is sightly different when I typing cargo +nightly run without sudo:

error: could not write output to /Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.31ofrb0z424v72al.rcgu.o: Permission denied
error: aborting due to previous error
error: could not compile ruststudy.

I was struggling about this for several days and do not quite know the exact reason that causes this problem, since the first problem was caused by enviroment variable setting. I guess the problem might still is about enviroment variable, but I did not see that my configuration was wrong.

@programmerjake
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the error you get when running without sudo is likely caused by the files in target being owned by root. try running

sudo rm -rf /Users/chenbowen/CLionProjects/ruststudy/target

which will delete your target directory, then you should be able to get it to work without using sudo (perhaps with some additional work).

@davidhewitt
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^ As jake says regarding the sudo issue.

If you're still having issues after that, can you please run the print-info example from this repository: https://github.com/davidhewitt/python-config, and paste the output here? That can help us to diagnose any issues easier.

@PosoSAgapo
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the error you get when running without sudo is likely caused by the files in target being owned by root. try running

sudo rm -rf /Users/chenbowen/CLionProjects/ruststudy/target

which will delete your target directory, then you should be able to get it to work without using sudo (perhaps with some additional work).

Sincerely thank you for your reply, I tried using your command then use run in CLion which will build the project firstly, but the problem is still here in the same way. What does the target directory do in a project? Would this be a problem that caused by the conflict between anaconda python and system default python?

@davidhewitt
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The target directory is where cargo puts all output. When you ran sudo cargo this would have created that directory as the root user, which is why you had permission trouble after that.

@PosoSAgapo
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The target directory is where cargo puts all output. When you ran sudo cargo this would have created that directory as the root user, which is why you had permission trouble after that.

Thank you for you detailed explanation, I runed the 'python-config' project and it gives below information:

thread 'main' panicked at 'no entry found for key', /Users/chenbowen/Desktop/python-config-master/src/lib.rs:50:20
stack backtrace:
0: backtrace::backtrace::libunwind::trace
at /Users/runner/.cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86
1: backtrace::backtrace::trace_unsynchronized
at /Users/runner/.cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66
2: std::sys_common::backtrace::_print_fmt
at src/libstd/sys_common/backtrace.rs:78
3: <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt
at src/libstd/sys_common/backtrace.rs:59
4: core::fmt::write
at src/libcore/fmt/mod.rs:1076
5: std::io::Write::write_fmt
at src/libstd/io/mod.rs:1537
6: std::sys_common::backtrace::_print
at src/libstd/sys_common/backtrace.rs:62
7: std::sys_common::backtrace::print
at src/libstd/sys_common/backtrace.rs:49
8: std::panicking::default_hook::{{closure}}
at src/libstd/panicking.rs:198
9: std::panicking::default_hook
at src/libstd/panicking.rs:217
10: std::panicking::rust_panic_with_hook
at src/libstd/panicking.rs:526
11: rust_begin_unwind
at src/libstd/panicking.rs:437
12: core::panicking::panic_fmt
at src/libcore/panicking.rs:85
13: core::option::expect_failed
at src/libcore/option.rs:1261
14: core::option::Option::expect
at /Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/src/rust/src/libcore/option.rs:344
15: <std::collections::hash::map::HashMap<K,V,S> as core::ops::index::Index<&Q>>::index
at /Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/src/rust/src/libstd/collections/hash/map.rs:1034
16: python_config::get_config_from_interpreter
at ./src/lib.rs:50
17: python_config::find_interpreters::{{closure}}
at ./src/lib.rs:149
18: core::ops::function::impls::<impl core::ops::function::FnMut for &mut F>::call_mut
at /Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/src/rust/src/libcore/ops/function.rs:275
19: <core::slice::Iter as core::iter::traits::iterator::Iterator>::find_map
at /Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/src/rust/src/libcore/slice/mod.rs:3572
20: <core::iter::adapters::FilterMap<I,F> as core::iter::traits::iterator::Iterator>::next
at /Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/src/rust/src/libcore/iter/adapters/mod.rs:1132
21: print_info::find_interpreter
at examples/print_info.rs:4
22: print_info::main
at examples/print_info.rs:14
23: std::rt::lang_start::{{closure}}
at /Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/src/rust/src/libstd/rt.rs:67
24: std::rt::lang_start_internal::{{closure}}
at src/libstd/rt.rs:52
25: std::panicking::try::do_call
at src/libstd/panicking.rs:348
26: std::panicking::try
at src/libstd/panicking.rs:325
27: std::panic::catch_unwind
at src/libstd/panic.rs:394
28: std::rt::lang_start_internal
at src/libstd/rt.rs:51
29: std::rt::lang_start
at /Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/src/rust/src/libstd/rt.rs:67
30: main
note: Some details are omitted, run with RUST_BACKTRACE=full for a verbose backtrace.

Should I run with RUST_BACKTRACE=full to get a verbose backtrace?

@PosoSAgapo
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PosoSAgapo commented Aug 14, 2020

Additionally, when I set PYTHONHOME and PYTHONPATH as enviroment variable, the anaconda python was disabled which the anacodna python enviroment cannot not be automatically activated when starts a new shell after I set the enviroment variable.

Then the system python could only be called using sudo command

Run pure 'python' which would call the system default python2 would give:

ImportError: No module named site

Run 'python3' which would use default python3 of OSX would give encoding error again!

Fatal Python error: initfsencoding: unable to load the file system codec, sys.path = ['/opt/anaconda3/bin/python', '/opt/anaconda3/bin/lib/python37.zip', '/opt/anaconda3/bin/lib/python3.7', '/opt/anaconda3/bin/lib/python3.7/lib-dynload']
ModuleNotFoundError: No module named 'encodings'

Only sudo command could make system python3 or python work again, I guess this phenomenon is related to this problem in here, but I do not know the connection between them.

@davidhewitt
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No, that backtrace is enough. Something's very strange with your python setup...!

I can't help more today, but I will update python-config over the weekend to try to help diagnose your setup. I'll post back here when I've got a new version for you to try.

@PosoSAgapo
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No, that backtrace is enough. Something's very strange with your python setup...!

I can't help more today, but I will update python-config over the weekend to try to help diagnose your setup. I'll post back here when I've got a new version for you to try.

Thank you so much, this problem has troubled me for several days and I could not find answer in the internet.

@davidhewitt
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If I had to make a guess though, this part of your PATH might be wrong:

/opt/anaconda3/condabin

what happens if you change that to

/opt/anaconda3/bin

?

Presumably you set that via .zshrc ?

@PosoSAgapo
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If I had to make a guess though, this part of your PATH might be wrong:

/opt/anaconda3/condabin

what happens if you change that to

/opt/anaconda3/bin

?

Presumably you set that via .zshrc ?

This path was actually done when installing anaconda3 which will automatically initialize the enviroment variable that relates to anacodna python, I will edit it and see what happens.

@PosoSAgapo
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Changing the anaconda enviroment variable did not make things right, but running this project in shell and in IDE gives different output, in shell running 'cargo run' it still gives encodings problem but in a IDE like CLion, cliking run button would give

error: linking with cc failed: exit code: 1
|
= note: "cc" "-m64" "-L" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.140i76tvprhi8724.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.141c50u9cbyjuzrz.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.15k44jvacwnpyohf.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.1e8qmcakbzj7kqf2.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.1htfksy4nzig3vhq.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.22xjn16u6a3okpgc.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.2h03t0wv2g1cda3f.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.2q5h9k0ob4g97ll1.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.34d6lk85be6lbol8.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.3baxicgouixw4jm.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.3deoqsechef1rfri.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.3ov05jl1druft6ti.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.3tanyi723f8d6qxp.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.3v54iupt5uc7iuuu.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.3vgdw8p4zqojlohw.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.47rtwdzmq8vrfb9e.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.4chae59e0sf56wnu.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.4x243lze9pb2imcl.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.54oyjxhls9ctawng.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.55g1cxy8pwkjxv8e.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.5dra31keg7bdjydk.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.9qhwtfyoncmqliy.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.q6qwsi9yn9jch2g.rcgu.o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.uoao78mf7hb130b.rcgu.o" "-o" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/ruststudy.31ofrb0z424v72al.rcgu.o" "-Wl,-dead_strip" "-nodefaultlibs" "-L" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps" "-L" "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.7/lib" "-L" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/libpyo3-f07d758f48232337.rlib" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/libparking_lot-bcfd76020e0653e3.rlib" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/libparking_lot_core-bba55b27ed443046.rlib" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/libsmallvec-ff409f469bbbdf5e.rlib" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/libcfg_if-99a1c55ab49a4433.rlib" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/liblock_api-0764144bcd8559cd.rlib" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/libscopeguard-fa0a164027cbd96c.rlib" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/libinstant-af8bca8197487044.rlib" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/liblibc-2a7c42407beac51f.rlib" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/libunindent-ebcf874e879c5218.rlib" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/libpaste-e880ea718b2c44be.rlib" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/libinventory-60f4ffd535ab00d3.rlib" "/Users/chenbowen/CLionProjects/ruststudy/target/debug/deps/libindoc-3d350b3c5125e618.rlib" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib/libstd-473bfa6649025a67.rlib" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib/libpanic_unwind-8e1c1c2f3b88fa26.rlib" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib/libhashbrown-73b777ace327e6f8.rlib" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib/librustc_std_workspace_alloc-b666c9c30cd05ed8.rlib" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib/libbacktrace-13799bdb379be2ce.rlib" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib/libbacktrace_sys-63abd5899e0d7e6b.rlib" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib/librustc_demangle-1b07ed0286619776.rlib" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib/libunwind-89188c3232051162.rlib" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib/libcfg_if-caece456e5f78fce.rlib" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib/liblibc-628a35dcde52dad2.rlib" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib/liballoc-a0fac8d46f97ec7a.rlib" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib/librustc_std_workspace_core-ef5998790eeac756.rlib" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib/libcore-3fe78a4d2924ae43.rlib" "/Users/chenbowen/.rustup/toolchains/nightly-x86_64-apple-darwin/lib/rustlib/x86_64-apple-darwin/lib/libcompiler_builtins-e166c2d904273814.rlib" "-lpython3.7m" "-lSystem" "-lresolv" "-lc" "-lm"
= note: ld: warning: directory not found for option '-L/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.7/lib'
ld: library not found for -lpython3.7m
clang: error: linker command failed with exit code 1 (use -v to see invocation)

Which has different outputs, I wonder what could cause the error message not being the same when running in shell and IDE?

@davidhewitt
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Apologies, didn't get around to this on the weekend; I'll try to add the patch to python-config at some point in the coming week.

Regarding your different error messages in shell vs IDE - I guess they have different environment variables? You may want to check your IDE configuration, because I think it won't use your .zshrc by default.

@PosoSAgapo
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  • I guess they

Thank you for your reply. The IDE configuration is the same. I would like to know how the rust calls the python? Maybe it find a python but cannot find its related packages that may be used to initialize?

@davidhewitt
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@PosoSAgapo sorry for the delay in fixing python-config - I've now just updated it. If you're still experiencing this issue, do you want to try the updated python-config and paste the output here?

@davidhewitt
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As there has been no response on this question for some time, I'm going to close it. Thank you for the discussion.

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