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Running the autoflake command twice, the first with -remove-all-unused-imports flag and the second with --ignore-pass-statements, got the desired outcome (removed unused imports weren't replaced with "pass").
I can't describe it well in title, so I just show the example.
in this case, pw_pext is unused import.
After
autoflake --in-place --remove-unused-variables --remove-all-unused-imports $file
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