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monailabel cannot be installed in python 3.12 #1750

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jamesobutler opened this issue Oct 10, 2024 · 6 comments
Closed

monailabel cannot be installed in python 3.12 #1750

jamesobutler opened this issue Oct 10, 2024 · 6 comments

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@jamesobutler
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jamesobutler commented Oct 10, 2024 •
edited
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Describe the bug
I run into issues running pip install monailabel using Python 3.12. I was able to successfully run pip install monai successfully though.

Currently the project specifies that it should be able to be installed on python 3.8 or newer which would include Python 3.12 (originally released October 2, 2023).

MONAILabel/setup.cfg

Line 30 in ac65ad3

python_requires = >= 3.8

To Reproduce
Steps to reproduce the behavior:

  1. Install Python 3.12
  2. Run pip install monailabel
  3. Observe the following output:
Collecting monailabel
  Downloading monailabel-0.8.3-202405250550-py3-none-any.whl.metadata (22 kB)
Collecting bcrypt==4.1.2 (from monailabel)
  Downloading bcrypt-4.1.2-cp39-abi3-win_amd64.whl.metadata (9.8 kB)
Collecting cachetools==5.3.3 (from monailabel)
  Downloading cachetools-5.3.3-py3-none-any.whl.metadata (5.3 kB)
Collecting dicomweb-client==0.59.1 (from dicomweb-client[gcp]==0.59.1->monailabel)
  Downloading dicomweb_client-0.59.1-py3-none-any.whl.metadata (3.5 kB)
Collecting einops==0.7.0 (from monailabel)
  Downloading einops-0.7.0-py3-none-any.whl.metadata (13 kB)
Collecting expiring-dict==1.1.0 (from monailabel)
  Downloading expiring_dict-1.1.0-py3-none-any.whl.metadata (1.2 kB)
Collecting expiringdict==1.2.2 (from monailabel)
  Downloading expiringdict-1.2.2-py3-none-any.whl.metadata (3.7 kB)
Collecting fastapi==0.110.2 (from monailabel)
  Downloading fastapi-0.110.2-py3-none-any.whl.metadata (24 kB)
Collecting filelock==3.11.0 (from monailabel)
  Downloading filelock-3.11.0-py3-none-any.whl.metadata (2.5 kB)
Collecting girder-client==3.2.3 (from monailabel)
  Downloading girder-client-3.2.3.tar.gz (21 kB)
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
  Installing backend dependencies ... done
  Preparing metadata (pyproject.toml) ... done
Collecting google-auth==2.29.0 (from monailabel)
  Downloading google_auth-2.29.0-py2.py3-none-any.whl.metadata (4.7 kB)
Collecting httpx==0.27.0 (from monailabel)
  Downloading httpx-0.27.0-py3-none-any.whl.metadata (7.2 kB)
Collecting monai>=1.3.1 (from monai[fire,gdown,ignite,itk,lmdb,mlflow,nibabel,openslide,pillow,psutil,skimage,tensorboard,torchvision,tqdm]>=1.3.1->monailabel)
  Downloading monai-1.3.2-py3-none-any.whl.metadata (10 kB)
Collecting ninja==1.11.1.1 (from monailabel)
  Downloading ninja-1.11.1.1-py2.py3-none-win_amd64.whl.metadata (5.4 kB)
Collecting numpymaxflow==0.0.6 (from monailabel)
  Downloading numpymaxflow-0.0.6.tar.gz (14 kB)
  Installing build dependencies ... error
  error: subprocess-exited-with-error

  × pip subprocess to install build dependencies did not run successfully.
  │ exit code: 2
  ╰─> [108 lines of output]
      Collecting setuptools
        Using cached setuptools-75.1.0-py3-none-any.whl.metadata (6.9 kB)
      Collecting numpy==1.22.0
        Downloading numpy-1.22.0.zip (11.3 MB)
           --------------------------------------- 11.3/11.3 MB 35.2 MB/s eta 0:00:00
        Installing build dependencies: started
        Installing build dependencies: finished with status 'done'
        Getting requirements to build wheel: started
        Getting requirements to build wheel: finished with status 'done'
      ERROR: Exception:
      Traceback (most recent call last):
        File "C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_internal\cli\base_command.py", line 105, in _run_wrapper
          status = _inner_run()
                   ^^^^^^^^^^^^
        File "C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_internal\cli\base_command.py", line 96, in _inner_run
          return self.run(options, args)
                 ^^^^^^^^^^^^^^^^^^^^^^^
        File "C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_internal\cli\req_command.py", line 67, in wrapper
          return func(self, options, args)
                 ^^^^^^^^^^^^^^^^^^^^^^^^^
        File "C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_internal\commands\install.py", line 379, in run
          requirement_set = resolver.resolve(
                            ^^^^^^^^^^^^^^^^^
        File "C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_internal\resolution\resolvelib\resolver.py", line 95, in resolve
          result = self._result = resolver.resolve(
                                  ^^^^^^^^^^^^^^^^^
        File "C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_vendor\resolvelib\resolvers.py", line 546, in resolve
          state = resolution.resolve(requirements, max_rounds=max_rounds)
                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
        File "C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_vendor\resolvelib\resolvers.py", line 397, in resolve
          self._add_to_criteria(self.state.criteria, r, parent=None)
        File "C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_vendor\resolvelib\resolvers.py", line 173, in _add_to_criteria
          if not criterion.candidates:
                 ^^^^^^^^^^^^^^^^^^^^
        File "C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_vendor\resolvelib\structs.py", line 156, in __bool__
          return bool(self._sequence)
                 ^^^^^^^^^^^^^^^^^^^^
        File "C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_internal\resolution\resolvelib\found_candidates.py", line 174, in __bool__
          return any(self)
                 ^^^^^^^^^
        File "C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_internal\resolution\resolvelib\found_candidates.py", line 162, in <genexpr>
          return (c for c in iterator if id(c) not in self._incompatible_ids)
                             ^^^^^^^^
        File "C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_internal\resolution\resolvelib\found_candidates.py", line 53, in _iter_built
          candidate = func()
                      ^^^^^^
        File "C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_internal\resolution\resolvelib\factory.py", line 186, in _make_candidate_from_link
          base: Optional[BaseCandidate] = self._make_base_candidate_from_link(
                                          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
        File "C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_internal\resolution\resolvelib\factory.py", line 232, in _make_base_candidate_from_link
          self._link_candidate_cache[link] = LinkCandidate(
                                             ^^^^^^^^^^^^^^
        File "C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_internal\resolution\resolvelib\candidates.py", line 303, in __init__
          super().__init__(
        File "C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_internal\resolution\resolvelib\candidates.py", line 158, in __init__
          self.dist = self._prepare()
                      ^^^^^^^^^^^^^^^
        File "C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_internal\resolution\resolvelib\candidates.py", line 235, in _prepare
          dist = self._prepare_distribution()
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
        File "C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_internal\resolution\resolvelib\candidates.py", line 314, in _prepare_distribution
          return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
        File "C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_internal\operations\prepare.py", line 527, in prepare_linked_requirement
          return self._prepare_linked_requirement(req, parallel_builds)
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
        File "C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_internal\operations\prepare.py", line 642, in _prepare_linked_requirement
          dist = _get_prepared_distribution(
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^
        File "C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_internal\operations\prepare.py", line 72, in _get_prepared_distribution
          abstract_dist.prepare_distribution_metadata(
        File "C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_internal\distributions\sdist.py", line 56, in prepare_distribution_metadata
          self._install_build_reqs(finder)
        File "C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_internal\distributions\sdist.py", line 126, in _install_build_reqs
          build_reqs = self._get_build_requires_wheel()
                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
        File "C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_internal\distributions\sdist.py", line 103, in _get_build_requires_wheel
          return backend.get_requires_for_build_wheel()
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
        File "C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_internal\utils\misc.py", line 706, in get_requires_for_build_wheel
          return super().get_requires_for_build_wheel(config_settings=cs)
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
        File "C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_vendor\pyproject_hooks\_impl.py", line 166, in get_requires_for_build_wheel
          return self._call_hook('get_requires_for_build_wheel', {
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
        File "C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_vendor\pyproject_hooks\_impl.py", line 321, in _call_hook
          raise BackendUnavailable(data.get('traceback', ''))
      pip._vendor.pyproject_hooks._impl.BackendUnavailable: Traceback (most recent call last):
        File "C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_vendor\pyproject_hooks\_in_process\_in_process.py", line 77, in _build_backend
          obj = import_module(mod_path)
                ^^^^^^^^^^^^^^^^^^^^^^^
        File "C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Lib\importlib\__init__.py", line 90, in import_module
          return _bootstrap._gcd_import(name[level:], package, level)
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
        File "<frozen importlib._bootstrap>", line 1387, in _gcd_import
        File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
        File "<frozen importlib._bootstrap>", line 1310, in _find_and_load_unlocked
        File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed
        File "<frozen importlib._bootstrap>", line 1387, in _gcd_import
        File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
        File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
        File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
        File "<frozen importlib._bootstrap_external>", line 995, in exec_module
        File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed
        File "C:\Users\butlej30383\AppData\Local\Temp\pip-build-env-jk2d6mxz\overlay\Lib\site-packages\setuptools\__init__.py", line 10, in <module>
          import distutils.core
      ModuleNotFoundError: No module named 'distutils'

      [end of output]

  note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error

× pip subprocess to install build dependencies did not run successfully.
│ exit code: 2
╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.
  1. Run pip install monai
Collecting monai
  Using cached monai-1.3.2-py3-none-any.whl.metadata (10 kB)
Collecting torch>=1.9 (from monai)
  Downloading torch-2.4.1-cp312-cp312-win_amd64.whl.metadata (27 kB)
Collecting numpy>=1.20 (from monai)
  Downloading numpy-2.1.2-cp312-cp312-win_amd64.whl.metadata (59 kB)
Collecting filelock (from torch>=1.9->monai)
  Downloading filelock-3.16.1-py3-none-any.whl.metadata (2.9 kB)
Collecting typing-extensions>=4.8.0 (from torch>=1.9->monai)
  Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
Collecting sympy (from torch>=1.9->monai)
  Using cached sympy-1.13.3-py3-none-any.whl.metadata (12 kB)
Collecting networkx (from torch>=1.9->monai)
  Using cached networkx-3.3-py3-none-any.whl.metadata (5.1 kB)
Collecting jinja2 (from torch>=1.9->monai)
  Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
Collecting fsspec (from torch>=1.9->monai)
  Using cached fsspec-2024.9.0-py3-none-any.whl.metadata (11 kB)
Collecting setuptools (from torch>=1.9->monai)
  Using cached setuptools-75.1.0-py3-none-any.whl.metadata (6.9 kB)
Collecting MarkupSafe>=2.0 (from jinja2->torch>=1.9->monai)
  Downloading MarkupSafe-3.0.1-cp312-cp312-win_amd64.whl.metadata (4.1 kB)
Collecting mpmath<1.4,>=1.1.0 (from sympy->torch>=1.9->monai)
  Using cached mpmath-1.3.0-py3-none-any.whl.metadata (8.6 kB)
Using cached monai-1.3.2-py3-none-any.whl (1.4 MB)
Downloading numpy-2.1.2-cp312-cp312-win_amd64.whl (12.6 MB)
   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 12.6/12.6 MB 24.6 MB/s eta 0:00:00
Downloading torch-2.4.1-cp312-cp312-win_amd64.whl (199.4 MB)
   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 199.4/199.4 MB 31.0 MB/s eta 0:00:00
Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
Downloading filelock-3.16.1-py3-none-any.whl (16 kB)
Using cached fsspec-2024.9.0-py3-none-any.whl (179 kB)
Using cached jinja2-3.1.4-py3-none-any.whl (133 kB)
Using cached networkx-3.3-py3-none-any.whl (1.7 MB)
Using cached setuptools-75.1.0-py3-none-any.whl (1.2 MB)
Using cached sympy-1.13.3-py3-none-any.whl (6.2 MB)
Downloading MarkupSafe-3.0.1-cp312-cp312-win_amd64.whl (15 kB)
Using cached mpmath-1.3.0-py3-none-any.whl (536 kB)
Installing collected packages: mpmath, typing-extensions, sympy, setuptools, numpy, networkx, MarkupSafe, fsspec, filelock, jinja2, torch, monai
  WARNING: The script isympy.exe is installed in 'C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts f2py.exe and numpy-config.exe are installed in 'C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts convert-caffe2-to-onnx.exe, convert-onnx-to-caffe2.exe and torchrun.exe are installed in 'C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Successfully installed MarkupSafe-3.0.1 filelock-3.16.1 fsspec-2024.9.0 jinja2-3.1.4 monai-1.3.2 mpmath-1.3.0 networkx-3.3 numpy-2.1.2 setuptools-75.1.0 sympy-1.13.3 torch-2.4.1 typing-extensions-4.12.2

Expected behavior
monailabel should be able to install from pypi using Python 3.12.

Environment

Python 3.12.7
Windows
@raviumadi
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Same for me.
On Ubuntu 24.04.1 LTS and python3.12.3
I can also install monai successfully. The setuptool : 75.2.0
Would appreciate any help in getting this going :-)

Collecting numpymaxflow>=0.0.6 (from monailabel==0.8.4+1.ga112200)
  Using cached numpymaxflow-0.0.6.tar.gz (14 kB)
  Installing build dependencies ... error
  error: subprocess-exited-with-error
  
  × pip subprocess to install build dependencies did not run successfully.
  │ exit code: 1
  ╰─> [56 lines of output]
      Collecting setuptools
        Using cached setuptools-75.2.0-py3-none-any.whl.metadata (6.9 kB)
      Collecting numpy==1.22.0
        Using cached numpy-1.22.0.zip (11.3 MB)
        Installing build dependencies: started
        Installing build dependencies: finished with status 'done'
        Getting requirements to build wheel: started
        Getting requirements to build wheel: finished with status 'error'
        error: subprocess-exited-with-error
      
        × Getting requirements to build wheel did not run successfully.
        │ exit code: 1
        ╰─> [33 lines of output]
            Traceback (most recent call last):
              File "/home/ravi/Documents/.testenv/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
                main()
              File "/home/ravi/Documents/.testenv/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
                json_out['return_val'] = hook(**hook_input['kwargs'])
                                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
              File "/home/ravi/Documents/.testenv/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 112, in get_requires_for_build_wheel
                backend = _build_backend()
                          ^^^^^^^^^^^^^^^^
              File "/home/ravi/Documents/.testenv/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 77, in _build_backend
                obj = import_module(mod_path)
                      ^^^^^^^^^^^^^^^^^^^^^^^
              File "/usr/lib/python3.12/importlib/__init__.py", line 90, in import_module
                return _bootstrap._gcd_import(name[level:], package, level)
                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
              File "<frozen importlib._bootstrap>", line 1387, in _gcd_import
              File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
              File "<frozen importlib._bootstrap>", line 1310, in _find_and_load_unlocked
              File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed
              File "<frozen importlib._bootstrap>", line 1387, in _gcd_import
              File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
              File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
              File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
              File "<frozen importlib._bootstrap_external>", line 995, in exec_module
              File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed
              File "/tmp/pip-build-env-41fdo9nd/overlay/lib/python3.12/site-packages/setuptools/__init__.py", line 16, in <module>
                import setuptools.version
              File "/tmp/pip-build-env-41fdo9nd/overlay/lib/python3.12/site-packages/setuptools/version.py", line 1, in <module>
                import pkg_resources
              File "/tmp/pip-build-env-41fdo9nd/overlay/lib/python3.12/site-packages/pkg_resources/__init__.py", line 2172, in <module>
                register_finder(pkgutil.ImpImporter, find_on_path)
                                ^^^^^^^^^^^^^^^^^^^
            AttributeError: module 'pkgutil' has no attribute 'ImpImporter'. Did you mean: 'zipimporter'?
            [end of output]
      
        note: This error originates from a subprocess, and is likely not a problem with pip.
      error: subprocess-exited-with-error
      
      × Getting requirements to build wheel did not run successfully.
      │ exit code: 1
      ╰─> See above for output.
      
      note: This error originates from a subprocess, and is likely not a problem with pip.
      [end of output]
  
 note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error

× pip subprocess to install build dependencies did not run successfully.
│ exit code: 1
╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.

@SachidanandAlle
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Collaborator

Correct. Have requested the dependent to be available for 3.12.

Otherwise for now it's kind of not officially supported. But it shall be fixed sooner to support python 3.12

@SachidanandAlle
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masadcv/numpymaxflow#19

@bcdarwin
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Note that MONAI-Label itself uses distutils as well in several places, so simply building numpymaxflow does not suffice and a straightforward patch akin to Project-MONAI/MONAI#7900 is needed.

@masadcv
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masadcv commented Oct 30, 2024

@SachidanandAlle @jamesobutler I have just released numpymaxflow v0.0.7 that supports python 3.12
Could you run this test again and update in case the problem persists from numpymaxflow side?

@jamesobutler
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Contributor Author

jamesobutler commented Oct 30, 2024 •
edited
Loading

I haven't tried runtime usage, but monailabel install on Python 3.12 is no longer blocked by the build of numpymaxflow.

re #1750 (comment) and the distutils usage, indeed a newer setuptools version is needed for Python 3.12 as done in Project-MONAI/MONAI@58106a6. Importing monailabel and distutils worked for me because disutils came vendored in the setuptools version that was grabbed (75.3.0).

Click for full output of installing monailabel for Python 3.12 
PS C:\Users\butlej30383\AppData\Local\Programs\Python\Python312> ./python.exe -m pip install monailabel
Collecting monailabel
  Downloading monailabel-0.8.4-202410172208-py3-none-any.whl.metadata (22 kB)
Collecting bcrypt>=4.1.2 (from monailabel)
  Downloading bcrypt-4.2.0-cp39-abi3-win_amd64.whl.metadata (9.9 kB)
Collecting cachetools>=5.3.3 (from monailabel)
  Downloading cachetools-5.5.0-py3-none-any.whl.metadata (5.3 kB)
Collecting dicomweb-client>=0.59.1 (from dicomweb-client[gcp]>=0.59.1->monailabel)
  Downloading dicomweb_client-0.59.3-py3-none-any.whl.metadata (4.5 kB)
Collecting einops>=0.7.0 (from monailabel)
  Downloading einops-0.8.0-py3-none-any.whl.metadata (12 kB)
Collecting expiring-dict>=1.1.0 (from monailabel)
  Downloading expiring_dict-1.1.1-py3-none-any.whl.metadata (1.2 kB)
Collecting expiringdict>=1.2.2 (from monailabel)
  Downloading expiringdict-1.2.2-py3-none-any.whl.metadata (3.7 kB)
Collecting fastapi>=0.110.2 (from monailabel)
  Downloading fastapi-0.115.4-py3-none-any.whl.metadata (27 kB)
Collecting filelock>=3.11.0 (from monailabel)
  Downloading filelock-3.16.1-py3-none-any.whl.metadata (2.9 kB)
Collecting girder-client>=3.2.3 (from monailabel)
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Building wheels for collected packages: girder-client, timeloop, fire
  Building wheel for girder-client (pyproject.toml) ... done
  Created wheel for girder-client: filename=girder_client-3.2.6-py3-none-any.whl size=21137 sha256=66c251c05b0b0565d68426be393cc6f4db6aeac75e5577433126591d62b00644
  Stored in directory: c:\users\butlej30383\appdata\local\pip\cache\wheels\ba\61\a7\5636fdfd7adfa340d29d02f9d13260da07e7fee489b13fe931
  Building wheel for timeloop (pyproject.toml) ... done
  Created wheel for timeloop: filename=timeloop-1.0.2-py3-none-any.whl size=3723 sha256=e2d25f4c6d1416ee3da7952f7073953452837e0e2577b9eedc5bc55bd786fa62
  Stored in directory: c:\users\butlej30383\appdata\local\pip\cache\wheels\8c\08\2e\3ce3e345dcf4ba834f60d1e040ab77ac7fd42f0bd06cde4e37
  Building wheel for fire (pyproject.toml) ... done
  Created wheel for fire: filename=fire-0.7.0-py3-none-any.whl size=114263 sha256=b218000aa0b91b1e3706389ba2e628632f68f5efed87d25ff41e88d36c16350c
  Stored in directory: c:\users\butlej30383\appdata\local\pip\cache\wheels\9e\5b\45\29f72e55d87a29426b04b3cfdf20325c079eb97ab74f59017d
Successfully built girder-client timeloop fire
Installing collected packages: timeloop, sortedcontainers, SimpleITK, pywin32, pytz, passlib, ninja, mpmath, lmdb, expiringdict, zipp, wrapt, watchdog, waitress, urllib3, tzdata, typing-extensions, threadpoolctl, termcolor, tensorboard-data-server, sympy, sqlparse, soupsieve, sniffio, smmap, six, setuptools, schedule, pyyaml, python-multipart, python-dotenv, PySocks, pyrsistent, pyparsing, pyjwt, pydicom, pyasn1, psutil, protobuf, Pillow, packaging, numpy, networkx, MarkupSafe, markdown, kiwisolver, joblib, itsdangerous, idna, h11, grpcio, greenlet, graphql-core, fsspec, fonttools, filelock, expiring-dict, einops, diskcache, cycler, colorama, cloudpickle, charset-normalizer, certifi, cachetools, blinker, bcrypt, attrs, annotated-types, absl-py, werkzeug, tqdm, tifffile, sqlalchemy, shapely, scipy, rsa, retrying, requests, python-dateutil, pynetdicom, pydantic-core, pyasn1-modules, pyarrow, openslide-python, numpymaxflow, nptyping, nibabel, Mako, lazy-loader, jsonschema, Jinja2, itk-core, importlib-metadata, imageio, httpcore, graphql-relay, gitdb, fire, deprecated, contourpy, click, beautifulsoup4, anyio, uvicorn, torch, tensorboard, starlette, scikit-learn, scikit-image, requests-toolbelt, pynrrd, pydicom-seg, pydantic, pandas, opentelemetry-api, matplotlib, itk-numerics, itk-io, httpx, graphene, google-auth, gitpython, Flask, docker, dicomweb-client, alembic, torchvision, pytorch-ignite, pydantic-settings, opentelemetry-semantic-conventions, monai, itk-filtering, girder-client, gdown, fastapi, databricks-sdk, opentelemetry-sdk, itk-segmentation, itk-registration, mlflow-skinny, itk, mlflow, monailabel
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  WARNING: The scripts convert-caffe2-to-onnx.exe, convert-onnx-to-caffe2.exe, torchfrtrace.exe and torchrun.exe are installed in 'C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The script tensorboard.exe is installed in 'C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The script httpx.exe is installed in 'C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The script flask.exe is installed in 'C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The script dicomweb_client.exe is installed in 'C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The script alembic.exe is installed in 'C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts girder-cli.exe and girder-client.exe are installed in 'C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The script gdown.exe is installed in 'C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The script fastapi.exe is installed in 'C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The script mlflow.exe is installed in 'C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The script mlflow.exe is installed in 'C:\Users\butlej30383\AppData\Local\Programs\Python\Python312\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Successfully installed Flask-3.0.3 Jinja2-3.1.4 Mako-1.3.6 MarkupSafe-3.0.2 Pillow-11.0.0 PySocks-1.7.1 SimpleITK-2.4.0 absl-py-2.1.0 alembic-1.13.3 annotated-types-0.7.0 anyio-4.6.2.post1 attrs-24.2.0 bcrypt-4.2.0 beautifulsoup4-4.12.3 blinker-1.8.2 cachetools-5.5.0 certifi-2024.8.30 charset-normalizer-3.4.0 click-8.1.7 cloudpickle-3.1.0 colorama-0.4.6 contourpy-1.3.0 cycler-0.12.1 databricks-sdk-0.36.0 deprecated-1.2.14 dicomweb-client-0.59.3 diskcache-5.6.3 docker-7.1.0 einops-0.8.0 expiring-dict-1.1.1 expiringdict-1.2.2 fastapi-0.115.4 filelock-3.16.1 fire-0.7.0 fonttools-4.54.1 fsspec-2024.10.0 gdown-5.2.0 girder-client-3.2.6 gitdb-4.0.11 gitpython-3.1.43 google-auth-2.35.0 graphene-3.4.1 graphql-core-3.2.5 graphql-relay-3.2.0 greenlet-3.1.1 grpcio-1.67.1 h11-0.14.0 httpcore-1.0.6 httpx-0.27.2 idna-3.10 imageio-2.36.0 importlib-metadata-8.4.0 itk-5.4.0 itk-core-5.4.0 itk-filtering-5.4.0 itk-io-5.4.0 itk-numerics-5.4.0 itk-registration-5.4.0 itk-segmentation-5.4.0 itsdangerous-2.2.0 joblib-1.4.2 jsonschema-3.2.0 kiwisolver-1.4.7 lazy-loader-0.4 lmdb-1.5.1 markdown-3.7 matplotlib-3.9.2 mlflow-2.17.1 mlflow-skinny-2.17.1 monai-1.4.0 monailabel-0.8.4 mpmath-1.3.0 networkx-3.4.2 nibabel-5.3.2 ninja-1.11.1.1 nptyping-2.5.0 numpy-1.26.4 numpymaxflow-0.0.7 openslide-python-1.4.1 opentelemetry-api-1.27.0 opentelemetry-sdk-1.27.0 opentelemetry-semantic-conventions-0.48b0 packaging-24.1 pandas-2.2.3 passlib-1.7.4 protobuf-5.28.3 psutil-6.1.0 pyarrow-17.0.0 pyasn1-0.6.1 pyasn1-modules-0.4.1 pydantic-2.9.2 pydantic-core-2.23.4 pydantic-settings-2.6.0 pydicom-2.4.4 pydicom-seg-0.4.1 pyjwt-2.9.0 pynetdicom-2.1.1 pynrrd-1.0.0 pyparsing-3.2.0 pyrsistent-0.20.0 python-dateutil-2.9.0.post0 python-dotenv-1.0.1 python-multipart-0.0.16 pytorch-ignite-0.4.11 pytz-2024.2 pywin32-308 pyyaml-6.0.2 requests-2.32.3 requests-toolbelt-1.0.0 retrying-1.3.4 rsa-4.9 schedule-1.2.2 scikit-image-0.24.0 scikit-learn-1.5.2 scipy-1.14.1 setuptools-75.3.0 shapely-2.0.6 six-1.16.0 smmap-5.0.1 sniffio-1.3.1 sortedcontainers-2.4.0 soupsieve-2.6 sqlalchemy-2.0.36 sqlparse-0.5.1 starlette-0.41.2 sympy-1.13.1 tensorboard-2.18.0 tensorboard-data-server-0.7.2 termcolor-2.5.0 threadpoolctl-3.5.0 tifffile-2024.9.20 timeloop-1.0.2 torch-2.5.1 torchvision-0.20.1 tqdm-4.66.6 typing-extensions-4.12.2 tzdata-2024.2 urllib3-2.2.3 uvicorn-0.32.0 waitress-3.0.1 watchdog-5.0.3 werkzeug-3.0.6 wrapt-1.16.0 zipp-3.20.2

[notice] A new release of pip is available: 24.2 -> 24.3.1
[notice] To update, run: python.exe -m pip install --upgrade pip
PS C:\Users\butlej30383\AppData\Local\Programs\Python\Python312>

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@bcdarwin @masadcv @SachidanandAlle @jamesobutler @raviumadi