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MONAI v1.3 release preparation-- MONAILabel sync #1557

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wyli opened this issue Oct 6, 2023 · 5 comments
Closed

MONAI v1.3 release preparation-- MONAILabel sync #1557

wyli opened this issue Oct 6, 2023 · 5 comments

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@wyli
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wyli commented Oct 6, 2023

@wyli wyli added this to MONAI v1.3 Oct 6, 2023
@wyli wyli moved this to Bundle Todo in MONAI v1.3 Oct 6, 2023
@matt3o
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matt3o commented Oct 6, 2023

"[Deprecated] AddChannel and AsChannelFirst in favor of EnsureChannelFirst" breaks the radiology sample-app as a lot of apps there are using both transforms.
I quickly tried fixing that locally by replacing everything with EnsureChannelFirst and EnsureChannelFirstd, however the test_epistemic.py unittest fails with "ValueError: Metadata not available and channel_dim=None, EnsureChannelFirst is not in use."
I tried to find another transform similar to AddChannel, like UnsqeezeDim but couldn't find any.

@wyli
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wyli commented Oct 9, 2023

fyi the related tutorial updates show potential solutions: Project-MONAI/tutorials#1527

@SachidanandAlle
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Some of the models used in examples for MONAI Label break due to required changes in the infer/train configs.. they are still using delete arguments/transforms

@SachidanandAlle
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#1560

@wyli
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wyli commented Oct 13, 2023

thanks, v1.3 is now available, please create new ticket on further issues

@wyli wyli closed this as completed Oct 13, 2023
@github-project-automation github-project-automation bot moved this from Bundle Todo to Done in MONAI v1.3 Oct 13, 2023
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