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Merging Dev Into gen-ai-dev and Undeclared Variable Fixes #7887
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Fixes model-zoo#537 ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: KumoLiu <[email protected]>
…I#7275) Part of Project-MONAI#7250. ### Description Fix the Python version for transformers smaller than 3.10. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: KumoLiu <[email protected]>
Fixes Project-MONAI#7263. ### Description Add diffusion loss. I also made a [demo notebook](https://github.com/kvttt/deep-atlas/blob/main/diffusion_loss_scale_test.ipynb) to provide some explanations and analyses of diffusion loss. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [x] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [x] In-line docstrings updated. - [x] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: kaibo <[email protected]> Co-authored-by: YunLiu <[email protected]>
Fixes # . ### Description A few sentences describing the changes proposed in this pull request. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: heyufan1995 <[email protected]>
Fixes Project-MONAI#7309 ### Description `DataAnalyzer` only catch error when data is on GPU, add catching error when data is on CPU. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <[email protected]>
Fixes Project-MONAI#7317 ### Description Add support specified filename for users to save like nibabel.save. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <[email protected]>
Fix typo. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <[email protected]>
Fixes # . ### Description A few sentences describing the changes proposed in this pull request. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: binliu <[email protected]>
Fixes Project-MONAI#7314 Project-MONAI#7315. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <[email protected]> Co-authored-by: Ben Murray <[email protected]>
Fixes Project-MONAI#7338 ### Description transformers' version is pinned to v4.22 since Project-MONAI#5157. Updated the version refer to huggingface/transformers#21678. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <[email protected]>
Bumps [github/codeql-action](https://github.com/github/codeql-action) from 2 to 3. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/github/codeql-action/releases">github/codeql-action's releases</a>.</em></p> <blockquote> <h2>CodeQL Bundle v2.15.5</h2> <p>Bundles CodeQL CLI v2.15.5</p> <ul> <li>(<a href="https://github.com/github/codeql-cli-binaries/blob/HEAD/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql-cli-binaries/releases/tag/v2.15.5">release</a>)</li> </ul> <p>Includes the following CodeQL language packs from <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5"><code>github/codeql@codeql-cli/v2.15.5</code></a>:</p> <ul> <li><code>codeql/cpp-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/cpp/ql/src/CHANGELOG.md">changelog</a>, <a 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<li><code>codeql/go-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/go/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/go/ql/lib">source</a>)</li> <li><code>codeql/java-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/java/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/java/ql/src">source</a>)</li> <li><code>codeql/java-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/java/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/java/ql/lib">source</a>)</li> <li><code>codeql/javascript-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/javascript/ql/src/CHANGELOG.md">changelog</a>, <a 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<h2>CodeQL Bundle</h2> <p>Bundles CodeQL CLI v2.15.3</p> <ul> <li>(<a href="https://github.com/github/codeql-cli-binaries/blob/HEAD/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql-cli-binaries/releases/tag/v2.15.3">release</a>)</li> </ul> <p>Includes the following CodeQL language packs from <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.3"><code>github/codeql@codeql-cli/v2.15.3</code></a>:</p> <ul> <li><code>codeql/cpp-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.3/cpp/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.3/cpp/ql/src">source</a>)</li> </ul> <!-- raw HTML omitted --> </blockquote> <p>... (truncated)</p> </details> <details> <summary>Changelog</summary> <p><em>Sourced from <a href="https://github.com/github/codeql-action/blob/main/CHANGELOG.md">github/codeql-action's changelog</a>.</em></p> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/github/codeql-action/commit/e0c2b0a8a0cf7360f5f17b1ee83b98565e81cbaf"><code>e0c2b0a</code></a> change version numbers inside processing function as well</li> <li><a href="https://github.com/github/codeql-action/commit/8e4a6c7a903526fda317aa47e226cbd5a4f1d358"><code>8e4a6c7</code></a> improve handling of changelog processing for backports</li> <li><a href="https://github.com/github/codeql-action/commit/511f073971a2ce589ceea100a90831c5ca4310bb"><code>511f073</code></a> Merge pull request <a href="https://redirect.github.com/github/codeql-action/issues/2033">#2033</a> from github/dependabot/npm_and_yarn/npm-0a98872b3d</li> <li><a href="https://github.com/github/codeql-action/commit/ebf5a837135e243d2654e281549af1ee7dc107aa"><code>ebf5a83</code></a> Merge pull request <a href="https://redirect.github.com/github/codeql-action/issues/2035">#2035</a> from github/mergeback/v3.22.11-to-main-b374143c</li> <li><a href="https://github.com/github/codeql-action/commit/7813bda958fdd91160a45ff6cdb3a723b381c8c6"><code>7813bda</code></a> Update checked-in dependencies</li> <li><a href="https://github.com/github/codeql-action/commit/2b2fb6b1dc9a83da2dd429ce0c83af9380973083"><code>2b2fb6b</code></a> Update changelog and version after v3.22.11</li> <li><a href="https://github.com/github/codeql-action/commit/b374143c1149a9115d881581d29b8390bbcbb59c"><code>b374143</code></a> Merge pull request <a href="https://redirect.github.com/github/codeql-action/issues/2034">#2034</a> from github/update-v3.22.11-64e61baea</li> <li><a href="https://github.com/github/codeql-action/commit/95591babe868195080e3ca2c641042066f097f3d"><code>95591ba</code></a> Merge branch 'main' into dependabot/npm_and_yarn/npm-0a98872b3d</li> <li><a href="https://github.com/github/codeql-action/commit/e2b5cc75ce46a4a33dbafa57e19019d6bd5a67be"><code>e2b5cc7</code></a> Update changelog for v3.22.11</li> <li>See full diff in <a href="https://github.com/github/codeql-action/compare/v2...v3">compare view</a></li> </ul> </details> <br /> [![Dependabot compatibility score](https://dependabot-badges.githubapp.com/badges/compatibility_score?dependency-name=github/codeql-action&package-manager=github_actions&previous-version=2&new-version=3)](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. 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Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 3 to 4. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/actions/upload-artifact/releases">actions/upload-artifact's releases</a>.</em></p> <blockquote> <h2>v4.0.0</h2> <h2>What's Changed</h2> <p>The release of upload-artifact@v4 and download-artifact@v4 are major changes to the backend architecture of Artifacts. They have numerous performance and behavioral improvements.</p> <p>For more information, see the <a href="https://github.com/actions/toolkit/tree/main/packages/artifact"><code>@actions/artifact</code></a> documentation.</p> <h2>New Contributors</h2> <ul> <li><a href="https://github.com/vmjoseph"><code>@vmjoseph</code></a> made their first contribution in <a href="https://redirect.github.com/actions/upload-artifact/pull/464">actions/upload-artifact#464</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/upload-artifact/compare/v3...v4.0.0">https://github.com/actions/upload-artifact/compare/v3...v4.0.0</a></p> <h2>v3.1.3</h2> <h2>What's Changed</h2> <ul> <li>chore(github): remove trailing whitespaces by <a href="https://github.com/ljmf00"><code>@ljmf00</code></a> in <a href="https://redirect.github.com/actions/upload-artifact/pull/313">actions/upload-artifact#313</a></li> <li>Bump <code>@actions/artifact</code> version to v1.1.2 by <a href="https://github.com/bethanyj28"><code>@bethanyj28</code></a> in <a href="https://redirect.github.com/actions/upload-artifact/pull/436">actions/upload-artifact#436</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/upload-artifact/compare/v3...v3.1.3">https://github.com/actions/upload-artifact/compare/v3...v3.1.3</a></p> <h2>v3.1.2</h2> <ul> <li>Update all <code>@actions/*</code> NPM packages to their latest versions- <a href="https://redirect.github.com/actions/upload-artifact/issues/374">#374</a></li> <li>Update all dev dependencies to their most recent versions - <a href="https://redirect.github.com/actions/upload-artifact/issues/375">#375</a></li> </ul> <h2>v3.1.1</h2> <ul> <li>Update actions/core package to latest version to remove <code>set-output</code> deprecation warning <a href="https://redirect.github.com/actions/upload-artifact/issues/351">#351</a></li> </ul> <h2>v3.1.0</h2> <h2>What's Changed</h2> <ul> <li>Bump <code>@actions/artifact</code> to v1.1.0 (<a href="https://redirect.github.com/actions/upload-artifact/pull/327">actions/upload-artifact#327</a>) <ul> <li>Adds checksum headers on artifact upload (<a href="https://redirect.github.com/actions/toolkit/pull/1095">actions/toolkit#1095</a>) (<a href="https://redirect.github.com/actions/toolkit/pull/1063">actions/toolkit#1063</a>)</li> </ul> </li> </ul> </blockquote> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/actions/upload-artifact/commit/c7d193f32edcb7bfad88892161225aeda64e9392"><code>c7d193f</code></a> Merge pull request <a href="https://redirect.github.com/actions/upload-artifact/issues/466">#466</a> from actions/v4-beta</li> <li><a href="https://github.com/actions/upload-artifact/commit/13131bb095770b4070a7477c3cd2d96e1c16d9f4"><code>13131bb</code></a> licensed cache</li> <li><a href="https://github.com/actions/upload-artifact/commit/4a6c273b9834f66a1d05c170dc3f80f9cdb9def1"><code>4a6c273</code></a> Merge branch 'main' into v4-beta</li> <li><a href="https://github.com/actions/upload-artifact/commit/f391bb91a3d3118aeca171c365bb319ece276b37"><code>f391bb9</code></a> Merge pull request <a href="https://redirect.github.com/actions/upload-artifact/issues/465">#465</a> from actions/robherley/v4-documentation</li> <li><a href="https://github.com/actions/upload-artifact/commit/9653d03c4b74c32144e02dae644fea70e079d4b3"><code>9653d03</code></a> Apply suggestions from code review</li> <li><a href="https://github.com/actions/upload-artifact/commit/875b63076402f25ef9d52c294c86ba4f97810575"><code>875b630</code></a> add limitations section</li> <li><a href="https://github.com/actions/upload-artifact/commit/ecb21463e93740a6be75c3116242169bfdbcb15a"><code>ecb2146</code></a> add compression example</li> <li><a href="https://github.com/actions/upload-artifact/commit/5e7604f84a055838f64ed68bb9904751523081ae"><code>5e7604f</code></a> trim some repeated info</li> <li><a href="https://github.com/actions/upload-artifact/commit/d6437d07581fe318a364512e6cf6b1dca6b4f92c"><code>d6437d0</code></a> naming</li> <li><a href="https://github.com/actions/upload-artifact/commit/1b561557037b4957d7d184e9aac02bec86c771eb"><code>1b56155</code></a> s/v4-beta/v4/g</li> <li>Additional commits viewable in <a href="https://github.com/actions/upload-artifact/compare/v3...v4">compare view</a></li> </ul> </details> <br /> [![Dependabot compatibility score](https://dependabot-badges.githubapp.com/badges/compatibility_score?dependency-name=actions/upload-artifact&package-manager=github_actions&previous-version=3&new-version=4)](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. 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Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4 to 5. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/actions/setup-python/releases">actions/setup-python's releases</a>.</em></p> <blockquote> <h2>v5.0.0</h2> <h2>What's Changed</h2> <p>In scope of this release, we update node version runtime from node16 to node20 (<a href="https://redirect.github.com/actions/setup-python/pull/772">actions/setup-python#772</a>). Besides, we update dependencies to the latest versions.</p> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/setup-python/compare/v4.8.0...v5.0.0">https://github.com/actions/setup-python/compare/v4.8.0...v5.0.0</a></p> <h2>v4.8.0</h2> <h2>What's Changed</h2> <p>In scope of this release we added support for GraalPy (<a href="https://redirect.github.com/actions/setup-python/pull/694">actions/setup-python#694</a>). You can use this snippet to set up GraalPy:</p> <pre lang="yaml"><code>steps: - uses: actions/checkout@v4 - uses: actions/setup-python@v4 with: python-version: 'graalpy-22.3' - run: python my_script.py </code></pre> <p>Besides, the release contains such changes as:</p> <ul> <li>Trim python version when reading from file by <a href="https://github.com/FerranPares"><code>@FerranPares</code></a> in <a href="https://redirect.github.com/actions/setup-python/pull/628">actions/setup-python#628</a></li> <li>Use non-deprecated versions in examples by <a href="https://github.com/jeffwidman"><code>@jeffwidman</code></a> in <a href="https://redirect.github.com/actions/setup-python/pull/724">actions/setup-python#724</a></li> <li>Change deprecation comment to past tense by <a href="https://github.com/jeffwidman"><code>@jeffwidman</code></a> in <a href="https://redirect.github.com/actions/setup-python/pull/723">actions/setup-python#723</a></li> <li>Bump <code>@babel/traverse</code> from 7.9.0 to 7.23.2 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/actions/setup-python/pull/743">actions/setup-python#743</a></li> <li>advanced-usage.md: Encourage the use actions/checkout@v4 by <a href="https://github.com/cclauss"><code>@cclauss</code></a> in <a href="https://redirect.github.com/actions/setup-python/pull/729">actions/setup-python#729</a></li> <li>Examples now use checkout@v4 by <a href="https://github.com/simonw"><code>@simonw</code></a> in <a href="https://redirect.github.com/actions/setup-python/pull/738">actions/setup-python#738</a></li> <li>Update actions/checkout to v4 by <a href="https://github.com/dmitry-shibanov"><code>@dmitry-shibanov</code></a> in <a href="https://redirect.github.com/actions/setup-python/pull/761">actions/setup-python#761</a></li> </ul> <h2>New Contributors</h2> <ul> <li><a href="https://github.com/FerranPares"><code>@FerranPares</code></a> made their first contribution in <a href="https://redirect.github.com/actions/setup-python/pull/628">actions/setup-python#628</a></li> <li><a href="https://github.com/timfel"><code>@timfel</code></a> made their first contribution in <a href="https://redirect.github.com/actions/setup-python/pull/694">actions/setup-python#694</a></li> <li><a href="https://github.com/jeffwidman"><code>@jeffwidman</code></a> made their first contribution in <a href="https://redirect.github.com/actions/setup-python/pull/724">actions/setup-python#724</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/setup-python/compare/v4...v4.8.0">https://github.com/actions/setup-python/compare/v4...v4.8.0</a></p> <h2>v4.7.1</h2> <h2>What's Changed</h2> <ul> <li>Bump word-wrap from 1.2.3 to 1.2.4 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/actions/setup-python/pull/702">actions/setup-python#702</a></li> <li>Add range validation for toml files by <a href="https://github.com/dmitry-shibanov"><code>@dmitry-shibanov</code></a> in <a href="https://redirect.github.com/actions/setup-python/pull/726">actions/setup-python#726</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/setup-python/compare/v4...v4.7.1">https://github.com/actions/setup-python/compare/v4...v4.7.1</a></p> <h2>v4.7.0</h2> <p>In scope of this release, the support for reading python version from pyproject.toml was added (<a href="https://redirect.github.com/actions/setup-python/pull/669">actions/setup-python#669</a>).</p> <pre lang="yaml"><code> - name: Setup Python uses: actions/setup-python@v4 </tr></table> </code></pre> </blockquote> <p>... (truncated)</p> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/actions/setup-python/commit/0a5c61591373683505ea898e09a3ea4f39ef2b9c"><code>0a5c615</code></a> Update action to node20 (<a href="https://redirect.github.com/actions/setup-python/issues/772">#772</a>)</li> <li><a href="https://github.com/actions/setup-python/commit/0ae58361cdfd39e2950bed97a1e26aa20c3d8955"><code>0ae5836</code></a> Add example of GraalPy to docs (<a href="https://redirect.github.com/actions/setup-python/issues/773">#773</a>)</li> <li><a href="https://github.com/actions/setup-python/commit/b64ffcaf5b410884ad320a9cfac8866006a109aa"><code>b64ffca</code></a> update actions/checkout to v4 (<a href="https://redirect.github.com/actions/setup-python/issues/761">#761</a>)</li> <li><a href="https://github.com/actions/setup-python/commit/8d2896179abf658742de432b3f203d2c2d86a587"><code>8d28961</code></a> Examples now use checkout@v4 (<a href="https://redirect.github.com/actions/setup-python/issues/738">#738</a>)</li> <li><a href="https://github.com/actions/setup-python/commit/7bc6abb01e0555719edc2dbca70a2fde309e5e56"><code>7bc6abb</code></a> advanced-usage.md: Encourage the use actions/checkout@v4 (<a href="https://redirect.github.com/actions/setup-python/issues/729">#729</a>)</li> <li><a href="https://github.com/actions/setup-python/commit/e8111cec9d3dc15220d8a3b638f08419f57b906a"><code>e8111ce</code></a> Bump <code>@babel/traverse</code> from 7.9.0 to 7.23.2 (<a href="https://redirect.github.com/actions/setup-python/issues/743">#743</a>)</li> <li><a href="https://github.com/actions/setup-python/commit/a00ea43da65e7c04d2bdae58b3afecd77057eb9e"><code>a00ea43</code></a> add fix for graalpy ci (<a href="https://redirect.github.com/actions/setup-python/issues/741">#741</a>)</li> <li><a href="https://github.com/actions/setup-python/commit/8635b1ccc5934e73ed3510980fd2e7790b85839b"><code>8635b1c</code></a> Change deprecation comment to past tense (<a href="https://redirect.github.com/actions/setup-python/issues/723">#723</a>)</li> <li><a href="https://github.com/actions/setup-python/commit/f6cc428f535856f9c23558d01765a42a4d6cf758"><code>f6cc428</code></a> Use non-deprecated versions in examples (<a href="https://redirect.github.com/actions/setup-python/issues/724">#724</a>)</li> <li><a href="https://github.com/actions/setup-python/commit/5f2af211d616f86005883b44826180b21abb4060"><code>5f2af21</code></a> Add GraalPy support (<a href="https://redirect.github.com/actions/setup-python/issues/694">#694</a>)</li> <li>Additional commits viewable in <a href="https://github.com/actions/setup-python/compare/v4...v5">compare view</a></li> </ul> </details> <br /> [![Dependabot compatibility score](https://dependabot-badges.githubapp.com/badges/compatibility_score?dependency-name=actions/setup-python&package-manager=github_actions&previous-version=4&new-version=5)](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- <details> <summary>Dependabot commands and options</summary> <br /> You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show <dependency name> ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) </details> Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 3 to 4. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/actions/download-artifact/releases">actions/download-artifact's releases</a>.</em></p> <blockquote> <h2>v4.0.0</h2> <h2>What's Changed</h2> <p>The release of upload-artifact@v4 and download-artifact@v4 are major changes to the backend architecture of Artifacts. They have numerous performance and behavioral improvements.</p> <p>For more information, see the <a href="https://github.com/actions/toolkit/tree/main/packages/artifact"><code>@actions/artifact</code></a> documentation.</p> <h2>New Contributors</h2> <ul> <li><a href="https://github.com/bflad"><code>@bflad</code></a> made their first contribution in <a href="https://redirect.github.com/actions/download-artifact/pull/194">actions/download-artifact#194</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/download-artifact/compare/v3...v4.0.0">https://github.com/actions/download-artifact/compare/v3...v4.0.0</a></p> <h2>v3.0.2</h2> <ul> <li>Bump <code>@actions/artifact</code> to v1.1.1 - <a href="https://redirect.github.com/actions/download-artifact/pull/195">actions/download-artifact#195</a></li> <li>Fixed a bug in Node16 where if an HTTP download finished too quickly (<1ms, e.g. when it's mocked) we attempt to delete a temp file that has not been created yet <a href="hhttps://redirect.github.com/actions/toolkit/pull/1278">actions/toolkit#1278</a></li> </ul> <h2>v3.0.1</h2> <ul> <li><a href="https://redirect.github.com/actions/download-artifact/pull/178">Bump <code>@actions/core</code> to 1.10.0</a></li> </ul> </blockquote> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/actions/download-artifact/commit/f44cd7b40bfd40b6aa1cc1b9b5b7bf03d3c67110"><code>f44cd7b</code></a> Merge pull request <a href="https://redirect.github.com/actions/download-artifact/issues/259">#259</a> from actions/robherley/glob-downloads</li> <li><a href="https://github.com/actions/download-artifact/commit/3181fe853d2c9a606cd326853bf4c5b8ced5df02"><code>3181fe8</code></a> add some migration docs</li> <li><a href="https://github.com/actions/download-artifact/commit/aaaac7b403f278b6b7eebdca69ca1658616f1c57"><code>aaaac7b</code></a> licensed cache</li> <li><a href="https://github.com/actions/download-artifact/commit/7c9182f0e18dadedfbca3189ab7a22a416aa6714"><code>7c9182f</code></a> update readme</li> <li><a href="https://github.com/actions/download-artifact/commit/b94e7015566b40b2de5eeeda514f239968da2dd7"><code>b94e701</code></a> licensed cache</li> <li><a href="https://github.com/actions/download-artifact/commit/0b55470e40ab7435f445813ebc18b1107ecf7e32"><code>0b55470</code></a> add test case for globbed downloads to same directory</li> <li><a href="https://github.com/actions/download-artifact/commit/0b51c2ef9042b581aded9711127e4a6d5f71c550"><code>0b51c2e</code></a> update prettier/eslint versions</li> <li><a href="https://github.com/actions/download-artifact/commit/c4c6db724f9510b2b3cff5ebcc417c87a2b2fa97"><code>c4c6db7</code></a> support globbing artifact list & merging download directory</li> <li><a href="https://github.com/actions/download-artifact/commit/1bd0606e08fcaa4c28afc1fc7d45830ab5482dac"><code>1bd0606</code></a> Merge pull request <a href="https://redirect.github.com/actions/download-artifact/issues/252">#252</a> from stchr/patch-1</li> <li><a href="https://github.com/actions/download-artifact/commit/eff4d42b1f6ff704c7a0f37152ed8793673560ef"><code>eff4d42</code></a> fix default for run-id</li> <li>Additional commits viewable in <a href="https://github.com/actions/download-artifact/compare/v3...v4">compare view</a></li> </ul> </details> <br /> [![Dependabot compatibility score](https://dependabot-badges.githubapp.com/badges/compatibility_score?dependency-name=actions/download-artifact&package-manager=github_actions&previous-version=3&new-version=4)](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- <details> <summary>Dependabot commands and options</summary> <br /> You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show <dependency name> ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) </details> Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
…MONAI#7353) Bumps [peter-evans/slash-command-dispatch](https://github.com/peter-evans/slash-command-dispatch) from 3.0.1 to 3.0.2. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/peter-evans/slash-command-dispatch/releases">peter-evans/slash-command-dispatch's releases</a>.</em></p> <blockquote> <h2>Slash Command Dispatch v3.0.2</h2> <h2>What's Changed</h2> <ul> <li>fix: replace use of any type by <a href="https://github.com/peter-evans"><code>@peter-evans</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/152">peter-evans/slash-command-dispatch#152</a></li> <li>fixing link to <code>Get a pull request</code> by <a href="https://github.com/Borda"><code>@Borda</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/270">peter-evans/slash-command-dispatch#270</a></li> <li>Update getting-started.md due to changes in Github UI by <a href="https://github.com/martin-displayr"><code>@martin-displayr</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/289">peter-evans/slash-command-dispatch#289</a></li> <li>[Security] Fix GraphQL query to get a collaborator's permission by <a href="https://github.com/0xn3va"><code>@0xn3va</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/301">peter-evans/slash-command-dispatch#301</a></li> <li>129 dependency updates by <a href="https://github.com/dependabot"><code>@dependabot</code></a></li> </ul> <h2>New Contributors</h2> <ul> <li><a href="https://github.com/Borda"><code>@Borda</code></a> made their first contribution in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/270">peter-evans/slash-command-dispatch#270</a></li> <li><a href="https://github.com/martin-displayr"><code>@martin-displayr</code></a> made their first contribution in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/289">peter-evans/slash-command-dispatch#289</a></li> <li><a href="https://github.com/0xn3va"><code>@0xn3va</code></a> made their first contribution in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/301">peter-evans/slash-command-dispatch#301</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/peter-evans/slash-command-dispatch/compare/v3.0.1...v3.0.2">https://github.com/peter-evans/slash-command-dispatch/compare/v3.0.1...v3.0.2</a></p> </blockquote> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/f996d7b7aae9059759ac55e978cff76d91853301"><code>f996d7b</code></a> Fix the CollaboratorPermission GraphQL query (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/301">#301</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/05b97d641c7ed206082e7984193d314070260d44"><code>05b97d6</code></a> build(deps-dev): bump <code>@types/node</code> from 16.18.65 to 16.18.67 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/300">#300</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/8e7007329b5b0d971d44b9558606eed52edbdda6"><code>8e70073</code></a> build(deps-dev): bump eslint from 8.54.0 to 8.55.0 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/299">#299</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/bd00135609f8bb0e709eea67f2a294f928fd1e7a"><code>bd00135</code></a> build(deps-dev): bump <code>@types/node</code> from 16.18.62 to 16.18.65 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/298">#298</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/ee873b6d3d1e6ae67120bcfb3e807c1d11502741"><code>ee873b6</code></a> build(deps-dev): bump eslint from 8.53.0 to 8.54.0 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/296">#296</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/44abc47f988dc0de6261fb54747b79de67b6af0d"><code>44abc47</code></a> build(deps-dev): bump <code>@types/node</code> from 16.18.61 to 16.18.62 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/295">#295</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/19ad7b830c1554acf2ccefe7f3ff5566750d5e9b"><code>19ad7b8</code></a> build(deps-dev): bump <code>@types/node</code> from 16.18.60 to 16.18.61 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/294">#294</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/29a9815e9ffe9a5b9b4367e4b76770bcb468a7e7"><code>29a9815</code></a> build(deps-dev): bump prettier from 3.0.3 to 3.1.0 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/293">#293</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/ade03097a3cb6e69e3ed86210ec745493dacf6bc"><code>ade0309</code></a> build(deps-dev): bump eslint from 8.52.0 to 8.53.0 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/292">#292</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/fc8222e6761738cc303ace6ed030f7fe63d6da0c"><code>fc8222e</code></a> build(deps-dev): bump <code>@types/node</code> from 16.18.59 to 16.18.60 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/291">#291</a>)</li> <li>Additional commits viewable in <a href="https://github.com/peter-evans/slash-command-dispatch/compare/v3.0.1...v3.0.2">compare view</a></li> </ul> </details> <br /> [![Dependabot compatibility score](https://dependabot-badges.githubapp.com/badges/compatibility_score?dependency-name=peter-evans/slash-command-dispatch&package-manager=github_actions&previous-version=3.0.1&new-version=3.0.2)](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- <details> <summary>Dependabot commands and options</summary> <br /> You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show <dependency name> ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) </details> Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
…tiplication (Project-MONAI#7326) Fixes Project-MONAI#7323 ### Description Give more useful exception when batch is considered during matrix multiplication. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <[email protected]> Co-authored-by: Eric Kerfoot <[email protected]>
Fixes Project-MONAI#7222 ### Description remove int convert here. https://github.com/Project-MONAI/MONAI/blob/8fa6931b14ba9617a595fff1d396ac44cc82e207/monai/auto3dseg/analyzer.py#L259 ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <[email protected]>
…-MONAI#7381) Fixes Project-MONAI#7380. ### Description Mention [demo](https://github.com/Project-MONAI/tutorials/blob/main/modules/bending_energy_diffusion_loss_notes.ipynb) in bending energy and diffusion docstrings. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [x] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: kaibo <[email protected]>
Workaround for Project-MONAI#7382 Project-MONAI#7383 ### Description Based on the comment [here](wkentaro/gdown#291 (comment)), pin the gdown version as a workaround. Will review this one once gdown has some update internal. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: YunLiu <[email protected]>
Fixes Project-MONAI#7396 ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <[email protected]>
Fixes Project-MONAI#7394 ### Description When ImageFilter is in the transformation sequence it didn't pass the applied_operations. Now it is passed when present. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [x] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: axel.vlaminck <[email protected]>
Project-MONAI#7375) Fixes # . ### Description Add `compile` support in `SupervisedTrainer` and `SupervisedEvaluator`. Convert to `torch.Tensor` internally. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <[email protected]> Co-authored-by: Eric Kerfoot <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Fixes Project-MONAI#7407 ### Description Move `optional import cucim` inside the function to avoid using all GPUs. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
…`ITKReader` (Project-MONAI#7415) Fixes Project-MONAI#7414 Fixes Project-MONAI#7371 ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <[email protected]>
Fixes Project-MONAI#7421 ### Description https://pypi.org/project/black/24.1.1/ ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: YunLiu <[email protected]>
…roject-MONAI#7424) Fixes Project-MONAI#7416 ### Description update `rm -rf /opt/hostedtoolcache` avoid change the python version ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <[email protected]>
…MONAI#7428) Bumps [peter-evans/slash-command-dispatch](https://github.com/peter-evans/slash-command-dispatch) from 3.0.2 to 4.0.0. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/peter-evans/slash-command-dispatch/releases">peter-evans/slash-command-dispatch's releases</a>.</em></p> <blockquote> <h2>Slash Command Dispatch v4.0.0</h2> <p>⚙️ Updated runtime to Node.js 20</p> <ul> <li>The action now requires a minimum version of <a href="https://github.com/actions/runner/releases/tag/v2.308.0">v2.308.0</a> for the Actions runner. Update self-hosted runners to v2.308.0 or later to ensure compatibility.</li> </ul> <h2>What's Changed</h2> <ul> <li>build(deps-dev): bump <code>@types/node</code> from 16.18.67 to 16.18.68 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/302">peter-evans/slash-command-dispatch#302</a></li> <li>build(deps-dev): bump prettier from 3.1.0 to 3.1.1 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/303">peter-evans/slash-command-dispatch#303</a></li> <li>build(deps-dev): bump jest-circus from 27.4.2 to 27.5.1 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/176">peter-evans/slash-command-dispatch#176</a></li> <li>build(deps): bump actions/download-artifact from 3 to 4 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/304">peter-evans/slash-command-dispatch#304</a></li> <li>build(deps): bump actions/upload-artifact from 3 to 4 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/305">peter-evans/slash-command-dispatch#305</a></li> <li>build(deps-dev): bump eslint from 8.55.0 to 8.56.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/306">peter-evans/slash-command-dispatch#306</a></li> <li>build(deps-dev): bump eslint-plugin-prettier from 5.0.1 to 5.1.2 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/308">peter-evans/slash-command-dispatch#308</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 16.18.68 to 16.18.69 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/309">peter-evans/slash-command-dispatch#309</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 16.18.69 to 16.18.70 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/310">peter-evans/slash-command-dispatch#310</a></li> <li>build(deps-dev): bump eslint-plugin-prettier from 5.1.2 to 5.1.3 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/311">peter-evans/slash-command-dispatch#311</a></li> <li>build(deps-dev): bump prettier from 3.1.1 to 3.2.2 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/312">peter-evans/slash-command-dispatch#312</a></li> <li>build(deps-dev): bump prettier from 3.2.2 to 3.2.4 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/314">peter-evans/slash-command-dispatch#314</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 16.18.70 to 16.18.74 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/315">peter-evans/slash-command-dispatch#315</a></li> <li>build(deps): bump peter-evans/create-or-update-comment from 3 to 4 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/317">peter-evans/slash-command-dispatch#317</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 16.18.74 to 16.18.76 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/318">peter-evans/slash-command-dispatch#318</a></li> <li>feat: update runtime to node 20 by <a href="https://github.com/peter-evans"><code>@peter-evans</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/316">peter-evans/slash-command-dispatch#316</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/peter-evans/slash-command-dispatch/compare/v3.0.2...v4.0.0">https://github.com/peter-evans/slash-command-dispatch/compare/v3.0.2...v4.0.0</a></p> </blockquote> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/13bc09769d122a64f75aa5037256f6f2d78be8c4"><code>13bc097</code></a> feat: update runtime to node 20 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/316">#316</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/128d8b927253aae5457641113bd796a851741cda"><code>128d8b9</code></a> build(deps-dev): bump <code>@types/node</code> from 16.18.74 to 16.18.76 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/318">#318</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/df481df93d05f3a8098480367110c4ada97af98b"><code>df481df</code></a> build(deps): bump peter-evans/create-or-update-comment from 3 to 4 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/317">#317</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/d4579a0d226a3b6e976c29c768ccee3af222d281"><code>d4579a0</code></a> build(deps-dev): bump <code>@types/node</code> from 16.18.70 to 16.18.74 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/315">#315</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/8f053eaa2e080b0369bdd513c863dd7b147abfbe"><code>8f053ea</code></a> build(deps-dev): bump prettier from 3.2.2 to 3.2.4 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/314">#314</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/b3eb7837603d93c13112e589f373861dd9092f17"><code>b3eb783</code></a> build(deps-dev): bump prettier from 3.1.1 to 3.2.2 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/312">#312</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/c0334d0fedf1c486175ac2a034431ce86ca29a5e"><code>c0334d0</code></a> build(deps-dev): bump eslint-plugin-prettier from 5.1.2 to 5.1.3 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/311">#311</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/e627c61300384b5d34daa0160cec6013fdcae2f2"><code>e627c61</code></a> build(deps-dev): bump <code>@types/node</code> from 16.18.69 to 16.18.70 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/310">#310</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/5c23a33777cbce2760bfa697c816d136b265f92a"><code>5c23a33</code></a> build(deps-dev): bump <code>@types/node</code> from 16.18.68 to 16.18.69 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/309">#309</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/8dd62d5c459412393c923fd6a95342e1838b331b"><code>8dd62d5</code></a> build(deps-dev): bump eslint-plugin-prettier from 5.0.1 to 5.1.2 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/308">#308</a>)</li> <li>Additional commits viewable in <a href="https://github.com/peter-evans/slash-command-dispatch/compare/v3.0.2...v4.0.0">compare view</a></li> </ul> </details> <br /> [![Dependabot compatibility score](https://dependabot-badges.githubapp.com/badges/compatibility_score?dependency-name=peter-evans/slash-command-dispatch&package-manager=github_actions&previous-version=3.0.2&new-version=4.0.0)](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- <details> <summary>Dependabot commands and options</summary> <br /> You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show <dependency name> ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) </details> Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
…7429) Bumps [peter-evans/create-or-update-comment](https://github.com/peter-evans/create-or-update-comment) from 3 to 4. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/peter-evans/create-or-update-comment/releases">peter-evans/create-or-update-comment's releases</a>.</em></p> <blockquote> <h2>Create or Update Comment v4.0.0</h2> <p>⚙️ Updated runtime to Node.js 20</p> <ul> <li>The action now requires a minimum version of <a href="https://github.com/actions/runner/releases/tag/v2.308.0">v2.308.0</a> for the Actions runner. Update self-hosted runners to v2.308.0 or later to ensure compatibility.</li> </ul> <h2>What's Changed</h2> <ul> <li>build(deps): bump actions/setup-node from 3 to 4 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/273">peter-evans/create-or-update-comment#273</a></li> <li>build(deps-dev): bump <code>@vercel/ncc</code> from 0.38.0 to 0.38.1 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/274">peter-evans/create-or-update-comment#274</a></li> <li>build(deps-dev): bump eslint-plugin-jest from 27.4.2 to 27.4.3 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/276">peter-evans/create-or-update-comment#276</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 18.18.5 to 18.18.6 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/277">peter-evans/create-or-update-comment#277</a></li> <li>build(deps-dev): bump eslint from 8.51.0 to 8.52.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/275">peter-evans/create-or-update-comment#275</a></li> <li>build(deps-dev): bump eslint-plugin-jest from 27.4.3 to 27.6.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/278">peter-evans/create-or-update-comment#278</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 18.18.6 to 18.18.8 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/279">peter-evans/create-or-update-comment#279</a></li> <li>build(deps-dev): bump eslint from 8.52.0 to 8.53.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/280">peter-evans/create-or-update-comment#280</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 18.18.8 to 18.18.9 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/281">peter-evans/create-or-update-comment#281</a></li> <li>build(deps-dev): bump prettier from 3.0.3 to 3.1.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/282">peter-evans/create-or-update-comment#282</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 18.18.9 to 18.18.12 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/283">peter-evans/create-or-update-comment#283</a></li> <li>build(deps-dev): bump eslint from 8.53.0 to 8.54.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/284">peter-evans/create-or-update-comment#284</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 18.18.12 to 18.18.13 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/285">peter-evans/create-or-update-comment#285</a></li> <li>build(deps-dev): bump eslint from 8.54.0 to 8.55.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/286">peter-evans/create-or-update-comment#286</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 18.18.13 to 18.19.2 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/287">peter-evans/create-or-update-comment#287</a></li> <li>build(deps): bump chuhlomin/render-template from 1.8 to 1.9 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/288">peter-evans/create-or-update-comment#288</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 18.19.2 to 18.19.3 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/289">peter-evans/create-or-update-comment#289</a></li> <li>build(deps-dev): bump prettier from 3.1.0 to 3.1.1 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/290">peter-evans/create-or-update-comment#290</a></li> <li>build(deps-dev): bump eslint-plugin-prettier from 5.0.1 to 5.1.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/292">peter-evans/create-or-update-comment#292</a></li> <li>build(deps-dev): bump eslint from 8.55.0 to 8.56.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/293">peter-evans/create-or-update-comment#293</a></li> <li>build(deps): bump actions/download-artifact from 3 to 4 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/295">peter-evans/create-or-update-comment#295</a></li> <li>build(deps-dev): bump eslint-plugin-prettier from 5.1.0 to 5.1.2 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/296">peter-evans/create-or-update-comment#296</a></li> <li>build(deps-dev): bump eslint-plugin-jest from 27.6.0 to 27.6.1 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/297">peter-evans/create-or-update-comment#297</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 18.19.3 to 18.19.4 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/298">peter-evans/create-or-update-comment#298</a></li> <li>build(deps-dev): bump eslint-plugin-prettier from 5.1.2 to 5.1.3 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/299">peter-evans/create-or-update-comment#299</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 18.19.4 to 18.19.6 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/300">peter-evans/create-or-update-comment#300</a></li> <li>build(deps-dev): bump prettier from 3.1.1 to 3.2.3 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/301">peter-evans/create-or-update-comment#301</a></li> <li>build(deps-dev): bump eslint-plugin-jest from 27.6.1 to 27.6.3 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/302">peter-evans/create-or-update-comment#302</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 18.19.6 to 18.19.7 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/303">peter-evans/create-or-update-comment#303</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 18.19.7 to 18.19.8 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/304">peter-evans/create-or-update-comment#304</a></li> <li>build(deps-dev): bump prettier from 3.2.3 to 3.2.4 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/305">peter-evans/create-or-update-comment#305</a></li> <li>feat: update runtime to node 20 by <a href="https://github.com/peter-evans"><code>@peter-evans</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/306">peter-evans/create-or-update-comment#306</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/peter-evans/create-or-update-comment/compare/v3.1.0...v4.0.0">https://github.com/peter-evans/create-or-update-comment/compare/v3.1.0...v4.0.0</a></p> <h2>Create or Update Comment v3.1.0</h2> <h2>What's Changed</h2> <ul> <li>Add truncate warning to body of comment by <a href="https://github.com/ethanmdavidson"><code>@ethanmdavidson</code></a> and <a href="https://github.com/peter-evans"><code>@peter-evans</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/272">peter-evans/create-or-update-comment#272</a></li> <li>46 dependency updates by <a href="https://github.com/dependabot"><code>@dependabot</code></a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/peter-evans/create-or-update-comment/compare/v3.0.2...v3.1.0">https://github.com/peter-evans/create-or-update-comment/compare/v3.0.2...v3.1.0</a></p> <h2>Create or Update Comment v3.0.2</h2> <h2>What's Changed</h2> <!-- raw HTML omitted --> </blockquote> <p>... (truncated)</p> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/peter-evans/create-or-update-comment/commit/71345be0265236311c031f5c7866368bd1eff043"><code>71345be</code></a> feat: update runtime to node 20 (<a href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/306">#306</a>)</li> <li><a href="https://github.com/peter-evans/create-or-update-comment/commit/d41bfe36e5af6ca183ce8b04db32e4aa6412e693"><code>d41bfe3</code></a> build(deps-dev): bump prettier from 3.2.3 to 3.2.4 (<a href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/305">#305</a>)</li> <li><a href="https://github.com/peter-evans/create-or-update-comment/commit/73b4b9e4e37f8cbefbb82ca2abd9085a1afa1562"><code>73b4b9e</code></a> build(deps-dev): bump <code>@types/node</code> from 18.19.7 to 18.19.8 (<a href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/304">#304</a>)</li> <li><a href="https://github.com/peter-evans/create-or-update-comment/commit/b865fac7facb67bed02e0032aedefe6acf790c75"><code>b865fac</code></a> build(deps-dev): bump <code>@types/node</code> from 18.19.6 to 18.19.7 (<a href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/303">#303</a>)</li> <li><a href="https://github.com/peter-evans/create-or-update-comment/commit/52b668a9280a255397527f4131ff02f5005274c8"><code>52b668a</code></a> build(deps-dev): bump eslint-plugin-jest from 27.6.1 to 27.6.3 (<a href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/302">#302</a>)</li> <li><a href="https://github.com/peter-evans/create-or-update-comment/commit/974f56a1c3e9a9d05f2847c575dccf35c038e80e"><code>974f56a</code></a> build(deps-dev): bump prettier from 3.1.1 to 3.2.3 (<a href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/301">#301</a>)</li> <li><a href="https://github.com/peter-evans/create-or-update-comment/commit/2cbfe8b17bb3ba59cdb477ae1d88d14caa96100e"><code>2cbfe8b</code></a> build(deps-dev): bump <code>@types/node</code> from 18.19.4 to 18.19.6 (<a href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/300">#300</a>)</li> <li><a href="https://github.com/peter-evans/create-or-update-comment/commit/761872a701dedf6fcfe4c794d7e117dfbba8a4fb"><code>761872a</code></a> build(deps-dev): bump eslint-plugin-prettier from 5.1.2 to 5.1.3 (<a href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/299">#299</a>)</li> <li><a href="https://github.com/peter-evans/create-or-update-comment/commit/72c3238a4904d35331b8ad94c0eb21d799fb86c4"><code>72c3238</code></a> build(deps-dev): bump <code>@types/node</code> from 18.19.3 to 18.19.4 (<a href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/298">#298</a>)</li> <li><a href="https://github.com/peter-evans/create-or-update-comment/commit/07daf7bbdb1bf17ee35e4a8f3a541ecb83c0253d"><code>07daf7b</code></a> build(deps-dev): bump eslint-plugin-jest from 27.6.0 to 27.6.1 (<a href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/297">#297</a>)</li> <li>Additional commits viewable in <a href="https://github.com/peter-evans/create-or-update-comment/compare/v3...v4">compare view</a></li> </ul> </details> <br /> [![Dependabot compatibility score](https://dependabot-badges.githubapp.com/badges/compatibility_score?dependency-name=peter-evans/create-or-update-comment&package-manager=github_actions&previous-version=3&new-version=4)](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- <details> <summary>Dependabot commands and options</summary> <br /> You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. 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Bumps [actions/cache](https://github.com/actions/cache) from 3 to 4. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/actions/cache/releases">actions/cache's releases</a>.</em></p> <blockquote> <h2>v4.0.0</h2> <h2>What's Changed</h2> <ul> <li>Update action to node20 by <a href="https://github.com/takost"><code>@takost</code></a> in <a href="https://redirect.github.com/actions/cache/pull/1284">actions/cache#1284</a></li> <li>feat: save-always flag by <a href="https://github.com/to-s"><code>@to-s</code></a> in <a href="https://redirect.github.com/actions/cache/pull/1242">actions/cache#1242</a></li> </ul> <h2>New Contributors</h2> <ul> <li><a href="https://github.com/takost"><code>@takost</code></a> made their first contribution in <a href="https://redirect.github.com/actions/cache/pull/1284">actions/cache#1284</a></li> <li><a href="https://github.com/to-s"><code>@to-s</code></a> made their first contribution in <a href="https://redirect.github.com/actions/cache/pull/1242">actions/cache#1242</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/cache/compare/v3...v4.0.0">https://github.com/actions/cache/compare/v3...v4.0.0</a></p> <h2>v3.3.3</h2> <h2>What's Changed</h2> <ul> <li>Cache v3.3.3 by <a href="https://github.com/robherley"><code>@robherley</code></a> in <a href="https://redirect.github.com/actions/cache/pull/1302">actions/cache#1302</a></li> </ul> <h2>New Contributors</h2> <ul> <li><a href="https://github.com/robherley"><code>@robherley</code></a> made their first contribution in <a href="https://redirect.github.com/actions/cache/pull/1302">actions/cache#1302</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/cache/compare/v3...v3.3.3">https://github.com/actions/cache/compare/v3...v3.3.3</a></p> <h2>v3.3.2</h2> <h2>What's Changed</h2> <ul> <li>Fixed readme with new segment timeout values by <a href="https://github.com/kotewar"><code>@kotewar</code></a> in <a href="https://redirect.github.com/actions/cache/pull/1133">actions/cache#1133</a></li> <li>Readme fixes by <a href="https://github.com/kotewar"><code>@kotewar</code></a> in <a href="https://redirect.github.com/actions/cache/pull/1134">actions/cache#1134</a></li> <li>Updated description of the lookup-only input for main action by <a href="https://github.com/kotewar"><code>@kotewar</code></a> in <a href="https://redirect.github.com/actions/cache/pull/1130">actions/cache#1130</a></li> <li>Change two new actions mention as quoted text by <a href="https://github.com/bishal-pdMSFT"><code>@bishal-pdMSFT</code></a> in <a href="https://redirect.github.com/actions/cache/pull/1131">actions/cache#1131</a></li> <li>Update Cross-OS Caching tips by <a href="https://github.com/pdotl"><code>@pdotl</code></a> in <a href="https://redirect.github.com/actions/cache/pull/1122">actions/cache#1122</a></li> <li>Bazel example (Take <a href="https://redirect.github.com/actions/cache/issues/2">#2</a>️⃣) by <a href="https://github.com/vorburger"><code>@vorburger</code></a> in <a href="https://redirect.github.com/actions/cache/pull/1132">actions/cache#1132</a></li> <li>Remove actions to add new PRs and issues to a project board by <a href="https://github.com/jorendorff"><code>@jorendorff</code></a> in <a href="https://redirect.github.com/actions/cache/pull/1187">actions/cache#1187</a></li> <li>Consume latest toolkit and fix dangling promise bug by <a href="https://github.com/chkimes"><code>@chkimes</code></a> in <a href="https://redirect.github.com/actions/cache/pull/1217">actions/cache#1217</a></li> <li>Bump action version to 3.3.2 by <a href="https://github.com/bethanyj28"><code>@bethanyj28</code></a> in <a href="https://redirect.github.com/actions/cache/pull/1236">actions/cache#1236</a></li> </ul> <h2>New Contributors</h2> <ul> <li><a href="https://github.com/vorburger"><code>@vorburger</code></a> made their first contribution in <a href="https://redirect.github.com/actions/cache/pull/1132">actions/cache#1132</a></li> <li><a href="https://github.com/jorendorff"><code>@jorendorff</code></a> made their first contribution in <a href="https://redirect.github.com/actions/cache/pull/1187">actions/cache#1187</a></li> <li><a href="https://github.com/chkimes"><code>@chkimes</code></a> made their first contribution in <a href="https://redirect.github.com/actions/cache/pull/1217">actions/cache#1217</a></li> <li><a href="https://github.com/bethanyj28"><code>@bethanyj28</code></a> made their first contribution in <a href="https://redirect.github.com/actions/cache/pull/1236">actions/cache#1236</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/cache/compare/v3...v3.3.2">https://github.com/actions/cache/compare/v3...v3.3.2</a></p> <h2>v3.3.1</h2> <h2>What's Changed</h2> <ul> <li>Reduced download segment size to 128 MB and timeout to 10 minutes by <a href="https://github.com/kotewar"><code>@kotewar</code></a> in <a href="https://redirect.github.com/actions/cache/pull/1129">actions/cache#1129</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/cache/compare/v3...v3.3.1">https://github.com/actions/cache/compare/v3...v3.3.1</a></p> <h2>v3.3.0</h2> <h2>What's Changed</h2> <ul> <li>Bug: Permission is missing in cache delete example by <a href="https://github.com/kotokaze"><code>@kotokaze</code></a> in <a href="https://redirect.github.com/actions/cache/pull/1123">actions/cache#1123</a></li> </ul> <!-- raw HTML omitted --> </blockquote> <p>... (truncated)</p> </details> <details> <summary>Changelog</summary> <p><em>Sourced from <a href="https://github.com/actions/cache/blob/main/RELEASES.md">actions/cache's changelog</a>.</em></p> <blockquote> <h1>Releases</h1> <h3>3.0.0</h3> <ul> <li>Updated minimum runner version support from node 12 -> node 16</li> </ul> <h3>3.0.1</h3> <ul> <li>Added support for caching from GHES 3.5.</li> <li>Fixed download issue for files > 2GB during restore.</li> </ul> <h3>3.0.2</h3> <ul> <li>Added support for dynamic cache size cap on GHES.</li> </ul> <h3>3.0.3</h3> <ul> <li>Fixed avoiding empty cache save when no files are available for caching. (<a href="https://redirect.github.com/actions/cache/issues/624">issue</a>)</li> </ul> <h3>3.0.4</h3> <ul> <li>Fixed tar creation error while trying to create tar with path as <code>~/</code> home folder on <code>ubuntu-latest</code>. (<a href="https://redirect.github.com/actions/cache/issues/689">issue</a>)</li> </ul> <h3>3.0.5</h3> <ul> <li>Removed error handling by consuming actions/cache 3.0 toolkit, Now cache server error handling will be done by toolkit. (<a href="https://redirect.github.com/actions/cache/pull/834">PR</a>)</li> </ul> <h3>3.0.6</h3> <ul> <li>Fixed <a href="https://redirect.github.com/actions/cache/issues/809">#809</a> - zstd -d: no such file or directory error</li> <li>Fixed <a href="https://redirect.github.com/actions/cache/issues/833">#833</a> - cache doesn't work with github workspace directory</li> </ul> <h3>3.0.7</h3> <ul> <li>Fixed <a href="https://redirect.github.com/actions/cache/issues/810">#810</a> - download stuck issue. A new timeout is introduced in the download process to abort the download if it gets stuck and doesn't finish within an hour.</li> </ul> <h3>3.0.8</h3> <ul> <li>Fix zstd not working for windows on gnu tar in issues <a href="https://redirect.github.com/actions/cache/issues/888">#888</a> and <a href="https://redirect.github.com/actions/cache/issues/891">#891</a>.</li> <li>Allowing users to provide a custom timeout as input for aborting download of a cache segment using an environment variable <code>SEGMENT_DOWNLOAD_TIMEOUT_MINS</code>. Default is 60 minutes.</li> </ul> <h3>3.0.9</h3> <ul> <li>Enhanced the warning message for cache unavailablity in case of GHES.</li> </ul> <h3>3.0.10</h3> <ul> <li>Fix a bug with sorting inputs.</li> <li>Update definition for restore-keys in README.md</li> </ul> <!-- raw HTML omitted --> </blockquote> <p>... (truncated)</p> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/actions/cache/commit/13aacd865c20de90d75de3b17ebe84f7a17d57d2"><code>13aacd8</code></a> Merge pull request <a href="https://redirect.github.com/actions/cache/issues/1242">#1242</a> from to-s/main</li> <li><a href="https://github.com/actions/cache/commit/53b35c543921fe2e8b288765ff817de9de8d906f"><code>53b35c5</code></a> Merge branch 'main' into main</li> <li><a href="https://github.com/actions/cache/commit/65b8989fab3bb394817bdb845a453dff480c2b51"><code>65b8989</code></a> Merge pull request <a href="https://redirect.github.com/actions/cache/issues/1284">#1284</a> from takost/update-to-node-20</li> <li><a href="https://github.com/actions/cache/commit/d0be34d54485f31ca2ccbe66e6ea3d96544a807b"><code>d0be34d</code></a> Fix dist</li> <li><a href="https://github.com/actions/cache/commit/66cf064d47313d2cccf392d01bd10925da2bd072"><code>66cf064</code></a> Merge branch 'main' into update-to-node-20</li> <li><a href="https://github.com/actions/cache/commit/1326563738ddb735c5f2ce85cba8c79f33b728cd"><code>1326563</code></a> Merge branch 'main' into main</li> <li><a href="https://github.com/actions/cache/commit/e71876755e268d6cc25a5d3e3c46ae447e35290a"><code>e718767</code></a> Fix format</li> <li><a href="https://github.com/actions/cache/commit/01229828ffa049a8dee4db27bcb23ed33f2b451f"><code>0122982</code></a> Apply workaround for earlyExit</li> <li><a href="https://github.com/actions/cache/commit/3185ecfd6135856ca6d904ae032cff4f39b8b365"><code>3185ecf</code></a> Update "only-" actions to node20</li> <li><a href="https://github.com/actions/cache/commit/25618a0a675e8447e5ffc8ed9b7ddb2aaf927f65"><code>25618a0</code></a> Bump version</li> <li>Additional commits viewable in <a href="https://github.com/actions/cache/compare/v3...v4">compare view</a></li> </ul> </details> <br /> [![Dependabot compatibility score](https://dependabot-badges.githubapp.com/badges/compatibility_score?dependency-name=actions/cache&package-manager=github_actions&previous-version=3&new-version=4)](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- <details> <summary>Dependabot commands and options</summary> <br /> You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show <dependency name> ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) </details> Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: YunLiu <[email protected]>
workaround for Project-MONAI#7781 ### Description A few sentences describing the changes proposed in this pull request. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: YunLiu <[email protected]>
### Description - skip release_tag_docker for resource issue - increase tolerance for tests/test_clip_intensity_percentiles.py - skip tests/test_regularization.py for non-deterministic ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Fixes Project-MONAI#6704 ### Description Combined `map_classes_to_indices` and `generate_label_classes_crop_centers` to a single function `map_and_generate_sampling_centers` in monai.transforms.utils.py. ### Types of changes - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: ytl0623 <[email protected]> Co-authored-by: Eric Kerfoot <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Yu <[email protected]> Co-authored-by: YunLiu <[email protected]>
Fixes Project-MONAI#7753 ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: YunLiu <[email protected]>
Fixes Project-MONAI#7294 . ### Description Adds a `norm` param to ResNet ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [x] New tests added to cover the changes. - [x] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [x] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [x] In-line docstrings updated. - [x] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: Peter Kaplinsky <[email protected]> Co-authored-by: Peter Kaplinsky <[email protected]> Co-authored-by: YunLiu <[email protected]>
Fixes Project-MONAI#7793 ### Description The Update() method in ITK is used to trigger the execution of the pipeline. Add it to checks if the output data is up-to-date. If it is not (for example, if the input data or parameters have changed), it will recompute the output. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [x] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: YunLiu <[email protected]>
Fixes Project-MONAI#7802. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: YunLiu <[email protected]>
Signed-off-by: monai-bot <[email protected]> Signed-off-by: monai-bot <[email protected]> Co-authored-by: YunLiu <[email protected]>
…7808) Fixes Project-MONAI#7797 ### Description Ensure the same dtype when test to avoid precision issue. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Fixes Project-MONAI#7798 ### Description Add copy to avoid negative strides when save spatial shape. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: YunLiu <[email protected]> Co-authored-by: Eric Kerfoot <[email protected]>
Fixes Project-MONAI#7697 ### Description A few sentences describing the changes proposed in this pull request. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <[email protected]> Co-authored-by: Eric Kerfoot <[email protected]>
Fixes Project-MONAI#7646 ### Description A few sentences describing the changes proposed in this pull request. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [x] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [x] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [x] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: Suraj Pai <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: YunLiu <[email protected]> Co-authored-by: Ben Murray <[email protected]>
Fixes # . ### Description Requested by security to prevent DDOS. The new format is provided by blossom team. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: YanxuanLiu <[email protected]>
Signed-off-by: Eric Kerfoot <[email protected]>
Signed-off-by: Eric Kerfoot <[email protected]>
Signed-off-by: Eric Kerfoot <[email protected]>
Signed-off-by: Eric Kerfoot <[email protected]>
for more information, see https://pre-commit.ci
@KumoLiu There's something really wrong with the DCO check. It's flagging a lot of people, however every commit in the history for this PR appears to be from a PR or is one I've signed. Any idea? |
@virginiafdez This PR should address the issue we saw of many files being marked as changed because it merges in |
Hi @ericspod, yes, we have encountered this situation many times before, all due to the problem of email mismatch, for this PR we can manually set the DCO pass first, and then see if there is still a DCO problem when merge into dev. |
I'm fine with setting it to pass, though this seems funny since one of the "users" flagged is the monai-bot which wouldn't ever have used a different email. Thanks! |
Signed-off-by: Eric Kerfoot <[email protected]>
…ONAI into gen-ai-dev
/build |
Description
This merges
dev
intogen-ai-dev
and modifies/fixes some places in code to remove undeclared variable errors raised by pylint. This should all be non-breaking and not changing anything functional in this branch. When completed, the branch should be ready for merging intodev
.This also resolves various conflicts which need to be checked for correctness.
Types of changes
./runtests.sh -f -u --net --coverage
../runtests.sh --quick --unittests --disttests
.make html
command in thedocs/
folder.