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Fix lazy rand affine #6774

Merged
merged 6 commits into from
Jul 28, 2023
Merged

Fix lazy rand affine #6774

merged 6 commits into from
Jul 28, 2023

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function2-llx
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@function2-llx function2-llx commented Jul 25, 2023

Fixes #6773.

Description

Call rand_affine_grid() once before call rand_affine_grid.get_transformation_matrix(), since its documented as "Get the most recently applied transformation matrix", or the .affine attribute will not be set.
Also, set randomize=False here since randomization if performed in the beginning of the function.

Types of changes

  • Non-breaking change (fix or new feature that would not break existing functionality).
  • Integration tests passed locally by running ./runtests.sh -f -u --net --coverage.
  • Quick tests passed locally by running ./runtests.sh --quick --unittests --disttests.

@function2-llx function2-llx marked this pull request as ready for review July 25, 2023 17:51
@function2-llx function2-llx changed the title [WIP] Fix lazy rand affine Fix lazy rand affine Jul 25, 2023
Signed-off-by: function2 <[email protected]>
@function2-llx
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very sad, find this bug after training the model for 5 days

@ericspod
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@atbenmurray could you please have a look (I'm away still)? Thanks!

@ericspod ericspod requested a review from atbenmurray July 25, 2023 20:20
@atbenmurray
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Hi there @function2-llx , I'm sorry you've had a problem with this. I'll take a look at the proposed fix.

@function2-llx
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Thank you for your concern, @atbenmurray. I understand that this is an open-source project and issues are part of the process. Let's continue to work together to improve this project!

@atbenmurray
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Please forgive the delay. I've been looking into the code this morning. I think we might want to go a little further than the current PR, but I'll make suggestions in the review once I've come to a conclusion on that.

@atbenmurray
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@function2-llx Ok, I had a look at a limited refactor of RandAffine and the classes that it uses, but I think it isn't possible to make tweaks without making a larger refactor. As such, I think we should go ahead with the change that you are proposing.

Do you want to write some unit tests to cover the change to RandAffine? We certainly need additional tests to cover this.

@function2-llx
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@atbenmurray Hi, I'd like to help, but I have to rush my conference submission recently (Due on Aug. 15th), so I'm afraid that this PR is the most I can help recently. I can help more after the submission is finished.

@atbenmurray
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@function2-llx Don't worry about it. It has been a very useful spot! I'll write up some additional unit tests to go with it.

@wyli
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wyli commented Jul 28, 2023

/build

@wyli wyli enabled auto-merge (squash) July 28, 2023 21:01
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integration verified, please feel free to create follow up PRs, thanks

@wyli wyli merged commit 5feb353 into Project-MONAI:dev Jul 28, 2023
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lazy RandAffine has no effect
4 participants