extend SurfaceDiceMetric for 3D images

[dyollb]

Description

This PR extends the SurfaceDiceMetric for 3D images. The implementation already uses generic functions to obtain the boundary edges and compute the distance, the extension just

• removes the assertion that the input is 2D ([B,C,W,H]).
• updates the docstrings
• adds a test case in TestAllSurfaceDiceMetrics.test_tolerance_euclidean_distance_3d

fixes #5906
mentioning #4103

Types of changes

• Non-breaking change (fix or new feature that would not break existing functionality).
• Breaking change (fix or new feature that would cause existing functionality to change).
• New tests added to cover the changes.
• Integration tests passed locally by running ./runtests.sh -f -u --net --coverage.
• Quick tests passed locally by running ./runtests.sh --quick --unittests --disttests.
• In-line docstrings updated.
• Documentation updated, tested make html command in the docs/ folder.

[dyollb]

/black

[wyli]

Hi @dyollb, thanks for the PR! since you are looking at these components... would you be interested in fixing a related documentation issue #5906? I think to close the issue we just replace Normalized Surface Distance with Normalized Surface Dice in the docstring and include this reference https://arxiv.org/abs/2111.05408.

For the 3D option, it'll be very useful to clarify that this implementation is different from the deepmind's in terms of the voxel surface boundaries #4103, perhaps we include this URL https://github.com/Project-MONAI/MONAI/issues/4103 in the docstring. please let me know your thoughts, thanks!

[dyollb]

Hi @dyollb, thanks for the PR! since you are looking at these components... would you be interested in fixing a related documentation issue #5906? I think to close the issue we just replace Normalized Surface Distance with Normalized Surface Dice in the docstring and include this reference https://arxiv.org/abs/2111.05408.

For the 3D option, it'll be very useful to clarify that this implementation is different from the deepmind's in terms of the voxel surface boundaries #4103, perhaps we include this URL https://github.com/Project-MONAI/MONAI/issues/4103 in the docstring. please let me know your thoughts, thanks!

Thanks @wyli. I adapted the docstring accordingly.

[wyli]

thanks, I'll fix the style error and merge this soon..

[wyli]

/build