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Improve arg check and error for bundle run #6398

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Nic-Ma opened this issue Apr 19, 2023 · 0 comments · Fixed by #6400
Closed

Improve arg check and error for bundle run #6398

Nic-Ma opened this issue Apr 19, 2023 · 0 comments · Fixed by #6400
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enhancement New feature or request

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@Nic-Ma
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Nic-Ma commented Apr 19, 2023

Is your feature request related to a problem? Please describe.
Ticket reported by internal QA team:
MONAI 1.1 train --
python -m monai.bundle run train --config_file configs/train.json
MONAI 1.2 train --
python -m monai.bundle run --config_file configs/train.json

If user happen to write old API in new MONAI, no information pointing out the possible root cause.
The job ends without doing any thing, and no error message:

04/18/2023 06:16:29 AM bundle_test _run_commands INFO: Executing export PYTHONPATH=$PYTHONPATH:/workspace/bundles/monai_pathology_nuclei_segmentation_classification_v0.1.7 && echo $PYTHONPATH && python -m monai.bundle run training --meta_file /workspace/bundles/monai_pathology_nuclei_segmentation_classification_v0.1.7/configs/metadata.json --config_file /workspace/bundles/monai_pathology_nuclei_segmentation_classification_v0.1.7/configs/train.json --logging_file /workspace/bundles/monai_pathology_nuclei_segmentation_classification_v0.1.7/configs/logging.conf --network_def#freeze_encoder false --network_def#pretrained_url None --stage 1 2>&1 | tee running.log
:/workspace/bundles/monai_pathology_nuclei_segmentation_classification_v0.1.7
2023-04-18 06:16:33,631 - INFO - --- input summary of monai.bundle.scripts.run ---
2023-04-18 06:16:33,631 - INFO - > run_id: 'training'
2023-04-18 06:16:33,632 - INFO - > meta_file: '/workspace/bundles/monai_pathology_nuclei_segmentation_classification_v0.1.7/configs/metadata.json'
2023-04-18 06:16:33,632 - INFO - > config_file: '/workspace/bundles/monai_pathology_nuclei_segmentation_classification_v0.1.7/configs/train.json'
2023-04-18 06:16:33,632 - INFO - > logging_file: '/workspace/bundles/monai_pathology_nuclei_segmentation_classification_v0.1.7/configs/logging.conf'
2023-04-18 06:16:33,632 - INFO - > network_def#freeze_encoder: 'false'
2023-04-18 06:16:33,632 - INFO - > stage: 1
2023-04-18 06:16:33,632 - INFO - ---


2023-04-18 06:16:33,632 - INFO - Setting logging properties based on config: /workspace/bundles/monai_pathology_nuclei_segmentation_classification_v0.1.7/configs/logging.conf.

Please consider adding some hints (in the script or doc) to reduce the confusion during the API migration.

@Nic-Ma Nic-Ma added the enhancement New feature or request label Apr 19, 2023
@Nic-Ma Nic-Ma added this to the Bundle class [P1 v1.2] milestone Apr 19, 2023
@Nic-Ma Nic-Ma self-assigned this Apr 19, 2023
Nic-Ma added a commit that referenced this issue Apr 19, 2023
Fixes #6398 .

### Description

This PR added check and error message for `bundle run` API.

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: Nic Ma <[email protected]>
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