Fix FileNotFoundError when download bundle #25701
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# Jenkinsfile.monai-premerge | |
name: premerge | |
on: | |
# quick tests for pull requests and the releasing branches | |
push: | |
branches: | |
- dev | |
- main | |
- releasing/* | |
pull_request: | |
head_ref-ignore: | |
- dev | |
concurrency: | |
# automatically cancel the previously triggered workflows when there's a newer version | |
group: build-${{ github.event.pull_request.number || github.ref }} | |
cancel-in-progress: true | |
jobs: | |
# caching of these jobs: | |
# - docker-py3-pip- (shared) | |
# - ubuntu py37 pip- | |
# - os-latest-pip- (shared) | |
flake8-py3: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
opt: ["codeformat", "pytype", "mypy"] | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python 3.9 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: '3.9' | |
- name: cache weekly timestamp | |
id: pip-cache | |
run: | | |
echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT | |
- name: cache for pip | |
uses: actions/cache@v4 | |
id: cache | |
with: | |
path: ~/.cache/pip | |
key: ${{ runner.os }}-pip-${{ steps.pip-cache.outputs.datew }} | |
- name: Install dependencies | |
run: | | |
find /opt/hostedtoolcache/* -maxdepth 0 ! -name 'Python' -exec rm -rf {} \; | |
python -m pip install --upgrade pip wheel | |
python -m pip install -r requirements-dev.txt | |
- name: Lint and type check | |
run: | | |
# clean up temporary files | |
$(pwd)/runtests.sh --build --clean | |
# Github actions have 2 cores, so parallelize pytype | |
$(pwd)/runtests.sh --build --${{ matrix.opt }} -j 2 | |
quick-py3: # full dependencies installed tests for different OS | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [windows-latest, macOS-latest, ubuntu-latest] | |
timeout-minutes: 120 | |
steps: | |
- if: runner.os == 'windows' | |
name: Config pagefile (Windows only) | |
uses: al-cheb/[email protected] | |
with: | |
minimum-size: 8GB | |
maximum-size: 16GB | |
disk-root: "D:" | |
- uses: actions/checkout@v4 | |
- name: Set up Python 3.9 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: '3.9' | |
- name: Prepare pip wheel | |
run: | | |
which python | |
python -m pip install --upgrade pip wheel | |
- name: cache weekly timestamp | |
id: pip-cache | |
run: | | |
echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT | |
echo "dir=$(pip cache dir)" >> $GITHUB_OUTPUT | |
shell: bash | |
- name: cache for pip | |
uses: actions/cache@v4 | |
id: cache | |
with: | |
path: ${{ steps.pip-cache.outputs.dir }} | |
key: ${{ matrix.os }}-latest-pip-${{ steps.pip-cache.outputs.datew }} | |
- if: runner.os == 'windows' | |
name: Install torch cpu from pytorch.org (Windows only) | |
run: | | |
python -m pip install torch==1.13.1+cpu torchvision==0.14.1+cpu -f https://download.pytorch.org/whl/torch_stable.html | |
- if: runner.os == 'Linux' | |
name: Install itk pre-release (Linux only) | |
run: | | |
python -m pip install --pre -U itk | |
find /opt/hostedtoolcache/* -maxdepth 0 ! -name 'Python' -exec rm -rf {} \; | |
- name: Install the dependencies | |
run: | | |
python -m pip install --user --upgrade pip wheel | |
python -m pip install torch==1.13.1 torchvision==0.14.1 | |
cat "requirements-dev.txt" | |
python -m pip install -r requirements-dev.txt | |
python -m pip list | |
python setup.py develop # test no compile installation | |
shell: bash | |
- name: Run compiled (${{ runner.os }}) | |
run: | | |
python setup.py develop --uninstall | |
BUILD_MONAI=1 python setup.py develop # compile the cpp extensions | |
shell: bash | |
- name: Run quick tests (CPU ${{ runner.os }}) | |
run: | | |
python -c 'import torch; print(torch.__version__); print(torch.rand(5,3))' | |
python -c "import monai; monai.config.print_config()" | |
python -m unittest -v | |
env: | |
QUICKTEST: True | |
PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION: python # https://github.com/Project-MONAI/MONAI/issues/4354 | |
packaging: | |
runs-on: ubuntu-latest | |
env: | |
QUICKTEST: True | |
shell: bash | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: Set up Python 3.9 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: '3.9' | |
- name: cache weekly timestamp | |
id: pip-cache | |
run: | | |
echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT | |
- name: cache for pip | |
uses: actions/cache@v4 | |
id: cache | |
with: | |
path: | | |
~/.cache/pip | |
~/.cache/torch | |
key: ${{ runner.os }}-pip-${{ steps.pip-cache.outputs.datew }} | |
- name: Install dependencies | |
run: | | |
find /opt/hostedtoolcache/* -maxdepth 0 ! -name 'Python' -exec rm -rf {} \; | |
python -m pip install --user --upgrade pip setuptools wheel twine packaging | |
# install the latest pytorch for testing | |
# however, "pip install monai*.tar.gz" will build cpp/cuda with an isolated | |
# fresh torch installation according to pyproject.toml | |
python -m pip install torch>=1.9 torchvision | |
- name: Check packages | |
run: | | |
pip uninstall monai | |
pip list | grep -iv monai | |
git fetch --depth=1 origin +refs/tags/*:refs/tags/* | |
set -e | |
# build tar.gz and wheel | |
python setup.py check -m -s | |
python setup.py sdist bdist_wheel | |
python -m twine check dist/* | |
- run: echo "pwd=$PWD" >> $GITHUB_OUTPUT | |
id: root | |
- run: echo "tmp_dir=$(mktemp -d)" >> $GITHUB_OUTPUT | |
id: mktemp | |
- name: Move packages | |
run: | | |
printf ${{ steps.root.outputs.pwd }} | |
printf ${{ steps.mktemp.outputs.tmp_dir }} | |
# move packages to a temp dir | |
cp dist/monai* "${{ steps.mktemp.outputs.tmp_dir }}" | |
rm -r build dist monai.egg-info | |
cd "${{ steps.mktemp.outputs.tmp_dir }}" | |
ls -al | |
- name: Install wheel file | |
working-directory: ${{ steps.mktemp.outputs.tmp_dir }} | |
run: | | |
# install from wheel | |
python -m pip install monai*.whl | |
python -c 'import monai; monai.config.print_config()' 2>&1 | grep -iv "unknown" | |
python -c 'import monai; print(monai.__file__)' | |
python -m pip uninstall -y monai | |
rm monai*.whl | |
- name: Install source archive | |
working-directory: ${{ steps.mktemp.outputs.tmp_dir }} | |
run: | | |
# install from tar.gz | |
name=$(ls *.tar.gz | head -n1) | |
echo $name | |
python -m pip install $name[all] | |
python -c 'import monai; monai.config.print_config()' 2>&1 | grep -iv "unknown" | |
python -c 'import monai; print(monai.__file__)' | |
- name: Quick test | |
working-directory: ${{ steps.mktemp.outputs.tmp_dir }} | |
run: | | |
# run min tests | |
cp ${{ steps.root.outputs.pwd }}/requirements*.txt . | |
cp -r ${{ steps.root.outputs.pwd }}/tests . | |
ls -al | |
python -m pip install -r requirements-dev.txt | |
python -m unittest -v | |
env: | |
PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION: python # https://github.com/Project-MONAI/MONAI/issues/4354 | |
build-docs: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python 3.9 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: '3.9' | |
- name: cache weekly timestamp | |
id: pip-cache | |
run: | | |
echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT | |
- name: cache for pip | |
uses: actions/cache@v4 | |
id: cache | |
with: | |
path: | | |
~/.cache/pip | |
~/.cache/torch | |
key: ${{ runner.os }}-pip-${{ steps.pip-cache.outputs.datew }} | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip wheel | |
python -m pip install -r docs/requirements.txt | |
- name: Make html | |
run: | | |
cd docs/ | |
make clean | |
make html 2>&1 | tee tmp_log | |
if [[ $(grep -c "ERROR:" tmp_log) != 0 ]]; then echo "found errors"; grep "ERROR:" tmp_log; exit 1; fi | |
sed '/WARNING.*pip/d' tmp_log > tmp_log1; mv tmp_log1 tmp_log # monai#7133 | |
if [[ $(grep -c "WARNING:" tmp_log) != 0 ]]; then echo "found warnings"; grep "WARNING:" tmp_log; exit 1; fi | |
shell: bash |