thesis_main.tex

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Master Thesis 
% Polina Polunina
% November 2022 
%
% License:
% CC-BY-SA 4.0 -- Creative Commons Attribution-ShareAlike 4.0 International
% https://creativecommons.org/licenses/by-sa/4.0/legalcode
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\documentclass[
		a4paper,
		11pt,
		headsepline,
		captions=tableheading,
		%english,
		parskip=half,
		bibliography=totoc,
		twoside,
		]
		{scrartcl}
\usepackage[automark]{scrlayer-scrpage}
\usepackage[utf8]{inputenc}
\usepackage{lmodern}
\usepackage[T1]{fontenc}
\usepackage[german, english]{babel}
\usepackage{graphicx}
\usepackage[table,xcdraw]{xcolor}
\definecolor{darkblue}{rgb}{0,0,0.5} 
\usepackage{transparent}
\usepackage{import}
\usepackage{listings}
\usepackage{caption}
\usepackage{subcaption}
\captionsetup{
	      justification=RaggedRight,
	      singlelinecheck=true
	      }
\usepackage{wrapfig}
\usepackage[
	    left=3cm,
	    right=2cm,
	    top=2cm,
	    bottom=2cm,
	    includeheadfoot,
	    headheight=26pt
	    ]
	    {geometry}
\usepackage{colortbl}
\usepackage[hyphens]{url}
\Urlmuskip=0mu  plus 10mu
\usepackage[hidelinks]{hyperref}
\usepackage{caption}
\usepackage{amsmath}
\usepackage{amssymb}
\usepackage{mathtools}
\usepackage{bm}
\usepackage{enumitem} 
\usepackage{listings}
\definecolor{codegray}{rgb}{0.5,0.5,0.5}
\definecolor{codepurple}{rgb}{0.58,0,0.82}
\definecolor{codegreen}{rgb}{0.24,0.55,0.35}
\lstset{basicstyle=\ttfamily\footnotesize,
  showstringspaces=false,
  commentstyle=\color{codegreen},
  keywordstyle=\color{blue},
  numberstyle=\tiny\color{codegray},
  stringstyle=\color{codepurple},
  breakatwhitespace=false,         
  breaklines=true,                 
  captionpos=b,                    
  keepspaces=true,                 
  numbers=left,                    
  numbersep=5pt,                  
  showspaces=false,                
  showstringspaces=false,
  showtabs=false,                  
  tabsize=2,
  xleftmargin=.05\textwidth, 
  xrightmargin=.03\textwidth
}
\usepackage[nameinlink]{cleveref}
%\usepackage{lscape}
\usepackage{pdflscape}
\usepackage{tabu}
\usepackage{csquotes}
\usepackage{multirow}
\usepackage{siunitx}
\DeclareSIUnit\bp{bp}
\DeclareSIUnit\byte{B}
\usepackage[style=numeric,
	    citestyle=numeric,
	    backend=biber,
	    sorting=none]{biblatex}
\addbibresource{literature/thesis.bib}
\DefineBibliographyExtras{english}{%
  \let\finalandcomma\empty
  \let\finalandsemicolon\empty
}
\usepackage[toc,page]{appendix}


\usepackage{afterpage}

%break on URL lower case letters
\setcounter{biburllcpenalty}{5000}
\emergencystretch=1em

\newcommand{\xxx}{\textcolor{red}{XXX}}

\DeclareUnicodeCharacter{202F}{FIX ME!!!!}
\renewcommand{\labelenumi}{\alph{enumi})}

\pdfsuppresswarningpagegroup=1

%\RedeclareSectionCommand[
%  beforeskip=.5\baselineskip,
%  afterskip=.002\baselineskip]{section}
%\RedeclareSectionCommand[
%  beforeskip=0.4\baselineskip,
%  afterskip=0.002\baselineskip]{subsection} 

% left fixed width:
\newcolumntype{L}[1]{>{\raggedright\arraybackslash}p{#1}}

\input{glossary.tex}


\makeatletter
\def\hlinewd#1{%
\noalign{\ifnum0=`}\fi\hrule \@height #1 \futurelet
\reserved@a\@xhline}
\makeatother

\usepackage{tabularray}

\usepackage{float}

%sectioning
\makeatletter
\renewcommand\paragraph{\@startsection{paragraph}{4}{\z@}%
            {-2.5ex\@plus -1ex \@minus -.25ex}%
            {1.25ex \@plus .25ex}%
            {\normalfont\normalsize\bfseries}}
            
\renewcommand\subparagraph{\@startsection{subparagraph}{5}{\z@}%
            {-2.5ex\@plus -1ex \@minus -.25ex}%
            {1.25ex \@plus .25ex}%
            {\normalfont\normalsize\bfseries}}
\makeatother
\newcommand{\subsubsubsection}[1]{\paragraph{#1}\mbox{}\\}

\setcounter{secnumdepth}{5} % how many sectioning levels to assign numbers to
\setcounter{tocdepth}{3}    % how many sectioning levels to show in outline


\begin{document}
\selectlanguage{english}
\include{titlepage}
%\cleardoublepage
\include{declaration}
\include{acknowledgements}
\include{abstract}
\clearpage
\pdfbookmark[1]{\contentsname}{toc}
\tableofcontents
\clearpage
\include{introduction}
\include{priorWork}
\include{methods}
\include{results}
\include{discussionOutlook}
\include{appendix}

%\cleardoublepage
\printbibliography
\clearpage
\printglossaries

\end{document}