diff --git a/modules.json b/modules.json index 523c635..cb23b21 100644 --- a/modules.json +++ b/modules.json @@ -106,7 +106,7 @@ }, "fasta_gxf_busco_plot": { "branch": "main", - "git_sha": "7bf6fbca23edc94490ffa6709f52b2f71c6fb130", + "git_sha": "5b401d806f8d69599ae88422064aea4f0e432a09", "installed_by": ["subworkflows"] }, "gxf_fasta_agat_spaddintrons_spextractsequences": { diff --git a/subworkflows/gallvp/fasta_gxf_busco_plot/main.nf b/subworkflows/gallvp/fasta_gxf_busco_plot/main.nf index 299b225..abeca93 100644 --- a/subworkflows/gallvp/fasta_gxf_busco_plot/main.nf +++ b/subworkflows/gallvp/fasta_gxf_busco_plot/main.nf @@ -166,4 +166,3 @@ workflow FASTA_GXF_BUSCO_PLOT { annotation_png = ch_annotation_png // channel: [ png ] versions = ch_versions // channel: [ versions.yml ] } - diff --git a/subworkflows/gallvp/fasta_gxf_busco_plot/meta.yml b/subworkflows/gallvp/fasta_gxf_busco_plot/meta.yml index 9226357..6ae8afe 100644 --- a/subworkflows/gallvp/fasta_gxf_busco_plot/meta.yml +++ b/subworkflows/gallvp/fasta_gxf_busco_plot/meta.yml @@ -64,6 +64,12 @@ output: Channel containing BUSCO short summaries corresponding to fasta files Structure: [ val(meta), json ] pattern: "*.json" + - assembly_plot_summary_txt: + type: file + description: | + Channel containing BUSCO short summaries corresponding to fasta files renamed to include lineage in sample id + Structure: [ txt ] + pattern: "*.txt" - assembly_png: type: file description: | @@ -88,6 +94,12 @@ output: Channel containing BUSCO short summaries corresponding to annotation files Structure: [ val(meta), json ] pattern: "*.json" + - annotation_plot_summary_txt: + type: file + description: | + Channel containing BUSCO short summaries corresponding to annotation files renamed to include lineage in sample id + Structure: [ txt ] + pattern: "*.txt" - annotation_png: type: file description: | diff --git a/subworkflows/gallvp/fasta_gxf_busco_plot/tests/main.nf.test.snap b/subworkflows/gallvp/fasta_gxf_busco_plot/tests/main.nf.test.snap index 118ad7e..44a8c99 100644 --- a/subworkflows/gallvp/fasta_gxf_busco_plot/tests/main.nf.test.snap +++ b/subworkflows/gallvp/fasta_gxf_busco_plot/tests/main.nf.test.snap @@ -38,6 +38,11 @@ ], "1": [ + ], + "10": [ + "versions.yml:md5,36b11c442943567e471af0abd474a10b", + "versions.yml:md5,9435355f913e283f60b4fb7ef77dd52a", + "versions.yml:md5,e9d65e2f2f13175e99c5b7f4ae1013b9" ], "2": [ @@ -46,6 +51,9 @@ ], "4": [ + + ], + "5": [ [ { "id": "test", @@ -62,9 +70,6 @@ }, "test-bacteria_odb10-busco.batch_summary.txt:md5,d41d8cd98f00b204e9800998ecf8427e" ] - ], - "5": [ - ], "6": [ @@ -73,9 +78,10 @@ ], "8": [ - "versions.yml:md5,36b11c442943567e471af0abd474a10b", - "versions.yml:md5,9435355f913e283f60b4fb7ef77dd52a", - "versions.yml:md5,e9d65e2f2f13175e99c5b7f4ae1013b9" + + ], + "9": [ + ], "annotation_batch_summary": [ [ @@ -94,6 +100,9 @@ }, "test-bacteria_odb10-busco.batch_summary.txt:md5,d41d8cd98f00b204e9800998ecf8427e" ] + ], + "annotation_plot_summary_txt": [ + ], "annotation_png": [ @@ -137,6 +146,9 @@ }, "test2-bacteria_odb10-busco.batch_summary.txt:md5,d41d8cd98f00b204e9800998ecf8427e" ] + ], + "assembly_plot_summary_txt": [ + ], "assembly_png": [ @@ -155,10 +167,10 @@ } ], "meta": { - "nf-test": "0.8.4", - "nextflow": "23.10.1" + "nf-test": "0.9.0", + "nextflow": "24.04.4" }, - "timestamp": "2024-05-13T16:39:45.021811" + "timestamp": "2024-11-20T14:04:28.17169" }, "candidatus_portiera_aleyrodidarum - bacteroides_fragilis - genome": { "content": [