Future tools

[GallVp]

• SubPhaser: https://github.com/zhangrengang/SubPhaser
• Merqury: https://github.com/marbl/merqury Moved to Merqury #85
• findZX: https://github.com/hsigeman/findZX
• NGenomeSyn: https://github.com/hewm2008/NGenomeSyn; Consensus vs Haplotypes. Moved to NGenomeSyn #84

[GallVp]

• Jellyfish: https://github.com/gmarcais/Jellyfish. Ross, Version 1 took 1 TB of memory for a 1 GB genome.

[rosscrowhurst]

• Jellyfish: https://github.com/gmarcais/Jellyfish. Ross, Version 1 took 1 TB of memory for a 1 GB genome.

Jellyfish 1.1. Was a 3 or so Gb genome with a lot of short read data. If I remember correctly max mem was 2.1 Tb on the big mem server at the time (IKS joined 2 servers to make one virtual server with 4 TB RAM). Mostly likely would not use this much for other genomes due to combination of genome size and coverage of reads at the time

[GallVp]

https://github.com/huangnengCSU/compleasm

[GallVp]

• compleasm is another name for miniBUSCO. miniBUSCO does not support all the BUSCO modes yet and it is in beta release.
• SubPhaser is a phasing tool. The phasing QC part is also covered by Merqury which uses Meryl for k-mer counting
• FindZX itself is a snakemake analysis pipeline