.nf-core.yml

bump_version: null
lint:
  actions_ci: false
  multiqc_config: false
  template_strings: false
  included_configs: false
  files_exist:
    - conf/igenomes.config
    - conf/igenomes_ignored.config
    - assets/multiqc_config.yml
    - CODE_OF_CONDUCT.md
    - assets/nf-core-assemblyqc_logo_light.png
    - docs/images/nf-core-assemblyqc_logo_light.png
    - docs/images/nf-core-assemblyqc_logo_dark.png
    - .github/ISSUE_TEMPLATE/config.yml
    - .github/workflows/awstest.yml
    - .github/workflows/awsfulltest.yml
  files_unchanged:
    - LICENSE
    - .gitignore
    - .github/CONTRIBUTING.md
    - .github/PULL_REQUEST_TEMPLATE.md
    - .github/workflows/branch.yml
    - .github/workflows/linting.yml
    - docs/README.md
  nextflow_config:
    - manifest.name
    - manifest.homePage
    - validation.help.beforeText
    - validation.help.afterText
    - validation.summary.beforeText
    - validation.summary.afterText
nf_core_version: 3.0.2
org_path: null
repository_type: pipeline
template:
  author: Usman Rashid, Ken Smith, Ross Crowhurst, Chen Wu, Marcus Davy
  description: A NextFlow pipeline which evaluates assembly quality with multiple
    QC tools and presents the results in a unified html report.
  force: false
  is_nfcore: false
  name: assemblyqc
  org: plant-food-research-open
  outdir: .
  skip_features:
    - igenomes
    - multiqc
    - fastqc
  version: 2.2.1
update: null