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Note regarding --of Bismark #84

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PeteHaitch opened this issue Aug 4, 2014 · 0 comments
Closed

Note regarding --of Bismark #84

PeteHaitch opened this issue Aug 4, 2014 · 0 comments
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enhancement

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@PeteHaitch
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--of Bismark emulates the --no_overlap flag of Bismark (by default Bismark does not set this option and so by default Bismark does not account for overlapping mates). The comethylation documentation needs to make this clearer.
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