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Contributing to ProteoNeMo

We want to make contributing to this project as easy and transparent as possible.

Pull Requests

We actively welcome your pull requests.

  1. Fork the repo and create your branch from master.
  2. If you've added code that should be tested, add tests.
  3. If you've changed APIs, update the documentation.
  4. Ensure the test suite passes.
  5. Make sure your code lints.

Consult GitHub Help for more information on using pull requests.

We have very precise rules over how our git commit messages can be formatted. This leads to more readable messages that are easy to follow when looking through the project history. But also, we use the git commit messages to generate the Angular change log.

Commit Message Format

Each commit message consists of a header, a body and a footer. The header has a special format that includes a type, a scope and a subject:

<type>(<scope>): <subject>
<BLANK LINE>
<body>
<BLANK LINE>
<footer>

The header is mandatory and the scope of the header is optional.

Any line of the commit message cannot be longer 100 characters! This allows the message to be easier to read on GitHub as well as in various git tools.

The footer should contain a closing reference to an issue if any.

Samples: (even more samples)

docs(changelog): update changelog to beta.5

fix(release): need to depend on latest python version
The version in our version.py gets copied in setup.py, and users need the latest of these.

Revert

If the commit reverts a previous commit, it should begin with revert: , followed by the header of the reverted commit. In the body it should say: This reverts commit <hash>., where the hash is the SHA of the commit being reverted.

Type

Must be one of the following:

  • build: Changes that affect the build system or external dependencies
  • ci: Changes to our CI configuration files and scripts
  • docs: Documentation only changes
  • feat: A new feature
  • fix: A bug fix
  • perf: A code change that improves performance
  • refactor: A code change that neither fixes a bug nor adds a feature
  • style: Changes that do not affect the meaning of the code
  • test: Adding missing tests or correcting existing tests

Scope

The scope should be the name of the python package affected. Here are some examples.

Issues

We use GitHub issues to track public bugs. Please ensure your description is clear and has sufficient instructions to be able to reproduce the issue.