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Rhabdomyosarcoma (RMS) clinical metadata #398

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ewafula opened this issue Jan 5, 2023 · 2 comments
Closed

Rhabdomyosarcoma (RMS) clinical metadata #398

ewafula opened this issue Jan 5, 2023 · 2 comments

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@ewafula
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ewafula commented Jan 5, 2023

What are the scientific goals of the analysis?

Obtain clinical data for Javid Khan's Rhabdomyosarcoma (RMS) dbGap study, phs000720.v4.p1

What methods do you plan to use to accomplish the scientific goals?

Format the clinical data for OpenPedCan histologies and submit PR to D3b-codes repo

What input data are required for this analysis?

Clinical metadata files from dbGap and SRA associated with Javid Khan's Rhabdomyosarcoma study
Genomic sequencing of Pediatric Rhabdomyosarcoma

How long do you expect is needed to complete the analysis? Will it be a multi-step analysis?

?

Who will complete the analysis (please add a GitHub handle here if relevant)?

@sangeetashukla

What relevant scientific literature relates to this analysis?
@ewafula ewafula changed the title Proposed Analysis: Rhabdomyosarcoma (RMS) clinical metadata Jan 5, 2023
@ewafula ewafula mentioned this issue Jan 13, 2023
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@jharenza jharenza removed the blocked label Feb 11, 2023
@jharenza
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@sangeetashukla we can proceed with this now, study has been updated!! https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000720.v4.p1

@jharenza jharenza transferred this issue from d3b-center/ticket-tracker-OPC Jun 16, 2023
@jharenza
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jharenza commented Feb 4, 2024

closing, as this will not be completed in the near future

@jharenza jharenza closed this as completed Feb 4, 2024
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3 participants
@jharenza @ewafula @sangeetashukla