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This repository has been archived by the owner on Jun 16, 2023. It is now read-only.
Please call molecular subtype for new PNOC samples with following step
Once the PR for updating molecular-subtyping-HGG module is merged (HGG Module Update PART2 OpenPedCan-analysis#121) are in, run new PNOC samples through molecular-subtyping-HGG module first.
After the PR about subtyping correction/integration based on pathology dx (Molecular subtyping pathology update OpenPedCan-analysis#122) is in, run through molecular-subtyping-pathology, and merge the compiled_molecular_subtypes_with_clinical_pathology_feedback_and_report_info.tsv generated with the OpenPBTA v21 compiled_molecular_subtypes_with_clinical_pathology_feedback_and_report_info.tsv.
What data file(s) does this issue pertain to?
histologies.tsv
What release are you using?
v10
SNV, fusion, CNV, mutation, GISTIC, focal CN and TP53 scores file.
Put your question or report your issue here.
Please call molecular subtype for new PNOC samples with following step
Once the PR for updating
molecular-subtyping-HGG
module is merged (HGG Module Update PART2 OpenPedCan-analysis#121) are in, run new PNOC samples throughmolecular-subtyping-HGG
module first.After the PR about subtyping correction/integration based on pathology dx (Molecular subtyping pathology update OpenPedCan-analysis#122) is in, run through
molecular-subtyping-pathology
, and merge thecompiled_molecular_subtypes_with_clinical_pathology_feedback_and_report_info.tsv
generated with the OpenPBTA v21compiled_molecular_subtypes_with_clinical_pathology_feedback_and_report_info.tsv
.Once PR for subtyping integration (Molecular subtype integrate module update OpenPedCan-analysis#123) is in, run everything through
molecular-subtyping-integrate
and get subtyping information for PNOC samples.The text was updated successfully, but these errors were encountered: