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Martina Summer-Kutmon edited this page Sep 20, 2016 · 10 revisions

Release Notes for PathVisio 3.2.3

  • September 20 2016: Bug fix release
  • Default font size for data nodes increased
  • New command line argument "wpid" that installs WP plugin if needed and loads defined pathway from WikiPathways
  • Updated templates
  • Bug fixes

Release Notes for PathVisio 3.2.2

  • May 03 2016: Bug fix release

Release Notes for PathVisio 3.2.1

  • October 07 2015: Bug fix release
  • Started code cleanup
  • PathVisio core lib now also reads information about ontology tags
  • Bug fixes: #1781, #1787, #1794

Release Notes for PathVisio 3.2.0

  • February 28 2015: Bug fix release
  • Issues with Java 8 have been resolved
  • Code signing certificate provided by NRNB (via the Cytoscape Consortium non-profit organization) is now used - * Java security issues resolved
  • Bug fixes in the data import module and statistics module
  • Improvements in the plugin manager interface
  • New page for available key shortcuts in PathVisio: http://www.pathvisio.org/documentation/shortcuts/

Release Notes for PathVisio 3.1.3

  • January 31 2014: Bug fix release
  • GeneOntology terms are now removed from Search results for annotations
  • DataNodes need to be annotated with ID and Datasource or nothing (saving data nodes with only ID or datasource is not allowed anymore)

Release Notes for PathVisio 3.1.2

Release Notes for PathVisio 3.1.1

  • October 04 2013: Bug fix release 3.1.1
  • New data tab: show imported expression data
  • Lots and lots of bug fixes and improvements

Release Notes for PathVisio 3.1.0

  • July 02 2013: Feature release 3.1.0
  • Plugin manager improvements - browse feature by category, status information
  • Advancements in legend tab: missing data and criteria not met are added
  • Bug fix: External references for lines will show up immediately
  • Several bug fixes

Release Notes for PathVisio 3.0.1

  • June 06 2013: Bug fix release 3.0.1
  • fixed problem with publication references that got deleted when clicking undo

Release Notes for PathVisio 3.0.0

  • Mar 28 2013: Major release 3.0.0
  • basic plugin manager included
  • interaction annotation enabled
  • new gpml schema: GPML2013a
  • new object graphical line as another graphical shape
  • new structure of object panel
  • bug fixes in PathVisio and WikiPathways

Release Notes for PathVisio 3.0.0beta3a

  • Feb 20 2013: Point release
  • Disable dialog to warn about old Ensembl identifiers
  • Hide species specific Ensembl linkouts in the backpage (temporary fix for problem in BridgeDb)
  • Bug fix 1528

Release Notes for PathVisio 3.0.0beta3

  • Jan 25 2013
  • new backpage layout
  • possibility to select all lines in pathway editor, right click -> Select -> Select all lines
  • splash screen when starting PathVisio standalone application
  • new core module org.pathvisio.data was added to PathVisio as a separate API for biological data import
  • several bug fixes
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