diff --git a/NEWS.md b/NEWS.md index 9eb1eae..a890465 100644 --- a/NEWS.md +++ b/NEWS.md @@ -2,7 +2,8 @@ ## Internal changes * Added link to online documentation in package description -* Improved efficiency of heatmap examples +* Moved heatmap examples to dontrun to temporarily address CRAN clang18 issue + # mousetrap 3.2.2 diff --git a/docs/404.html b/docs/404.html index 42db92e..da5757f 100644 --- a/docs/404.html +++ b/docs/404.html @@ -32,7 +32,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html index e321467..55272aa 100644 --- a/docs/LICENSE-text.html +++ b/docs/LICENSE-text.html @@ -17,7 +17,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/authors.html b/docs/authors.html index c59f129..6dcf08e 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -17,7 +17,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/index.html b/docs/index.html index cbb193d..524858c 100644 --- a/docs/index.html +++ b/docs/index.html @@ -40,7 +40,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/news/index.html b/docs/news/index.html index eb13d88..93dbf5a 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -17,7 +17,7 @@ mousetrap - 3.2.2 + 3.2.3 @@ -51,7 +51,15 @@

Changelog

-

mousetrap 3.2.2

+

mousetrap 3.2.32024-01-19

+
+

Internal changes

+
+
+
+

mousetrap 3.2.22023-10-23

Announcements

diff --git a/docs/reference/KH2017_raw.html b/docs/reference/KH2017_raw.html index 54cb131..fd277cf 100644 --- a/docs/reference/KH2017_raw.html +++ b/docs/reference/KH2017_raw.html @@ -20,7 +20,7 @@ mousetrap - 3.2.2 + 3.2.3
diff --git a/docs/reference/bezier.html b/docs/reference/bezier.html index a775a8c..9565501 100644 --- a/docs/reference/bezier.html +++ b/docs/reference/bezier.html @@ -19,7 +19,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/bimodality_coefficient.html b/docs/reference/bimodality_coefficient.html index 9f16464..3b4286d 100644 --- a/docs/reference/bimodality_coefficient.html +++ b/docs/reference/bimodality_coefficient.html @@ -18,7 +18,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/index.html b/docs/reference/index.html index 2404337..8cdc6fb 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -17,7 +17,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mousetrap-package.html b/docs/reference/mousetrap-package.html index 33ee6da..77bd8e0 100644 --- a/docs/reference/mousetrap-package.html +++ b/docs/reference/mousetrap-package.html @@ -19,7 +19,7 @@ mousetrap - 3.2.2 + 3.2.3 @@ -242,7 +242,8 @@

Datasets

See also

-

Useful links:

diff --git a/docs/reference/mt_add_trajectory.html b/docs/reference/mt_add_trajectory.html index d6bf96c..a8b4b9c 100644 --- a/docs/reference/mt_add_trajectory.html +++ b/docs/reference/mt_add_trajectory.html @@ -17,7 +17,7 @@ mousetrap - 3.2.2 + 3.2.3
diff --git a/docs/reference/mt_add_variables.html b/docs/reference/mt_add_variables.html index 379e71c..005544e 100644 --- a/docs/reference/mt_add_variables.html +++ b/docs/reference/mt_add_variables.html @@ -21,7 +21,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_aggregate.html b/docs/reference/mt_aggregate.html index 63c1768..04c0488 100644 --- a/docs/reference/mt_aggregate.html +++ b/docs/reference/mt_aggregate.html @@ -21,7 +21,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_aggregate_per_subject.html b/docs/reference/mt_aggregate_per_subject.html index b9aa5b6..e0cacaf 100644 --- a/docs/reference/mt_aggregate_per_subject.html +++ b/docs/reference/mt_aggregate_per_subject.html @@ -22,7 +22,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_align.html b/docs/reference/mt_align.html index f42965d..f46873f 100644 --- a/docs/reference/mt_align.html +++ b/docs/reference/mt_align.html @@ -18,7 +18,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_align_start.html b/docs/reference/mt_align_start.html index 0f2a04c..ad415e5 100644 --- a/docs/reference/mt_align_start.html +++ b/docs/reference/mt_align_start.html @@ -17,7 +17,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_align_start_end.html b/docs/reference/mt_align_start_end.html index 455cd03..78770da 100644 --- a/docs/reference/mt_align_start_end.html +++ b/docs/reference/mt_align_start_end.html @@ -19,7 +19,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_angles.html b/docs/reference/mt_angles.html index 8f1b905..dd8c632 100644 --- a/docs/reference/mt_angles.html +++ b/docs/reference/mt_angles.html @@ -20,7 +20,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_animate.html b/docs/reference/mt_animate.html index 775b170..1fcdf6a 100644 --- a/docs/reference/mt_animate.html +++ b/docs/reference/mt_animate.html @@ -19,7 +19,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_average.html b/docs/reference/mt_average.html index 52c7fbc..5674a7a 100644 --- a/docs/reference/mt_average.html +++ b/docs/reference/mt_average.html @@ -21,7 +21,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_bind.html b/docs/reference/mt_bind.html index 5d3efcb..759882c 100644 --- a/docs/reference/mt_bind.html +++ b/docs/reference/mt_bind.html @@ -19,7 +19,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_check_bimodality.html b/docs/reference/mt_check_bimodality.html index b7e21a9..b718350 100644 --- a/docs/reference/mt_check_bimodality.html +++ b/docs/reference/mt_check_bimodality.html @@ -20,7 +20,7 @@ mousetrap - 3.2.2 + 3.2.3 @@ -212,8 +212,8 @@

Examples

#> 1 0.5099593 0.7212444 #> #> $HDS_simulated_p_value -#> z_MAD z_AD -#> 1 0.7855 0.753 +#> z_MAD z_AD +#> 1 0.7795 0.7535 #> # Assess bimodality per condition diff --git a/docs/reference/mt_check_resolution.html b/docs/reference/mt_check_resolution.html index 680acf2..fbab07a 100644 --- a/docs/reference/mt_check_resolution.html +++ b/docs/reference/mt_check_resolution.html @@ -19,7 +19,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_cluster.html b/docs/reference/mt_cluster.html index 704bd15..6e0e27e 100644 --- a/docs/reference/mt_cluster.html +++ b/docs/reference/mt_cluster.html @@ -19,7 +19,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_cluster_k.html b/docs/reference/mt_cluster_k.html index 9e65ee7..eb49aee 100644 --- a/docs/reference/mt_cluster_k.html +++ b/docs/reference/mt_cluster_k.html @@ -17,7 +17,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_count.html b/docs/reference/mt_count.html index ae6d848..2c50d6f 100644 --- a/docs/reference/mt_count.html +++ b/docs/reference/mt_count.html @@ -19,7 +19,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_derivatives.html b/docs/reference/mt_derivatives.html index 27c0ff7..5e8ef2e 100644 --- a/docs/reference/mt_derivatives.html +++ b/docs/reference/mt_derivatives.html @@ -21,7 +21,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_deviations.html b/docs/reference/mt_deviations.html index 5102375..680df1b 100644 --- a/docs/reference/mt_deviations.html +++ b/docs/reference/mt_deviations.html @@ -18,7 +18,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_diffmap.html b/docs/reference/mt_diffmap.html index 58347d9..4551df5 100644 --- a/docs/reference/mt_diffmap.html +++ b/docs/reference/mt_diffmap.html @@ -19,7 +19,7 @@ mousetrap - 3.2.2 + 3.2.3 @@ -214,15 +214,12 @@

Author

Examples

- 
mt_diffmap(KH2017, condition="Condition",
-  xres=400, smooth_radius=6, n_shades=5)
-#> Determine joint bounds 
-#> Calculating heatmap for x 
-#> Calculating heatmap for y 
-#> smooth image 
-#> creating heatmap:  400 x 245 px 
-
-#> heatmap created in 2s
+    
if (FALSE) {
+mt_diffmap(
+  KH2017, condition="Condition",
+  xres=400, smooth_radius=6, n_shades=5
+)
+}
diff --git a/docs/reference/mt_distmat.html b/docs/reference/mt_distmat.html index c94f690..941eb27 100644 --- a/docs/reference/mt_distmat.html +++ b/docs/reference/mt_distmat.html @@ -18,7 +18,7 @@ mousetrap - 3.2.2 + 3.2.3
diff --git a/docs/reference/mt_example.html b/docs/reference/mt_example.html index 78df99f..6dc1281 100644 --- a/docs/reference/mt_example.html +++ b/docs/reference/mt_example.html @@ -18,7 +18,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_example_raw.html b/docs/reference/mt_example_raw.html index a5b02ef..7ba7ebd 100644 --- a/docs/reference/mt_example_raw.html +++ b/docs/reference/mt_example_raw.html @@ -21,7 +21,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_exclude_finish.html b/docs/reference/mt_exclude_finish.html index a51bdf0..8c232ae 100644 --- a/docs/reference/mt_exclude_finish.html +++ b/docs/reference/mt_exclude_finish.html @@ -19,7 +19,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_exclude_initiation.html b/docs/reference/mt_exclude_initiation.html index ad4fdc5..347439c 100644 --- a/docs/reference/mt_exclude_initiation.html +++ b/docs/reference/mt_exclude_initiation.html @@ -19,7 +19,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_export_long.html b/docs/reference/mt_export_long.html index 17a3da1..c9e68d0 100644 --- a/docs/reference/mt_export_long.html +++ b/docs/reference/mt_export_long.html @@ -21,7 +21,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_heatmap.html b/docs/reference/mt_heatmap.html index 1a220da..2be5d1a 100644 --- a/docs/reference/mt_heatmap.html +++ b/docs/reference/mt_heatmap.html @@ -19,7 +19,7 @@ mousetrap - 3.2.2 + 3.2.3 @@ -150,14 +150,11 @@

Author

Examples

- 
mt_heatmap(KH2017, xres=500, n_shades=5, mean_image=0.2)
-#> spatializing trajectories 
-#> calculate image 
-#> smooth image 
-#> enhance image by 26.5 
-#> creating heatmap:  500 x 308 px 
-
-#> heatmap created in 1s
+    
if (FALSE) {
+mt_heatmap(KH2017, xres=500, n_shades=5, mean_image=0.2)
+}
+
+
diff --git a/docs/reference/mt_heatmap_ggplot.html b/docs/reference/mt_heatmap_ggplot.html index e031e2e..5f066d8 100644 --- a/docs/reference/mt_heatmap_ggplot.html +++ b/docs/reference/mt_heatmap_ggplot.html @@ -19,7 +19,7 @@ mousetrap - 3.2.2 + 3.2.3
@@ -147,13 +147,9 @@

Author

Examples

- 
mt_heatmap_ggplot(KH2017, xres=500, n_shades=5, mean_image=0.2)
-#> spatializing trajectories 
-#> calculate image 
-#> smooth image 
-#> enhance image by 26.5 
-#> Warning: Removed 1612 rows containing missing values (`geom_tile()`).
-
+    
if (FALSE) {
+mt_heatmap_ggplot(KH2017, xres=500, n_shades=5, mean_image=0.2)
+}
diff --git a/docs/reference/mt_heatmap_raw.html b/docs/reference/mt_heatmap_raw.html index 6ff3df5..f691146 100644 --- a/docs/reference/mt_heatmap_raw.html +++ b/docs/reference/mt_heatmap_raw.html @@ -20,7 +20,7 @@ mousetrap - 3.2.2 + 3.2.3
diff --git a/docs/reference/mt_import_long.html b/docs/reference/mt_import_long.html index 9c69c31..c464cf8 100644 --- a/docs/reference/mt_import_long.html +++ b/docs/reference/mt_import_long.html @@ -27,7 +27,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_import_mousetrap.html b/docs/reference/mt_import_mousetrap.html index 0e53afb..059cc39 100644 --- a/docs/reference/mt_import_mousetrap.html +++ b/docs/reference/mt_import_mousetrap.html @@ -27,7 +27,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_import_wide.html b/docs/reference/mt_import_wide.html index 841a67b..0f7e24b 100644 --- a/docs/reference/mt_import_wide.html +++ b/docs/reference/mt_import_wide.html @@ -28,7 +28,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_length_normalize.html b/docs/reference/mt_length_normalize.html index a92373c..e424406 100644 --- a/docs/reference/mt_length_normalize.html +++ b/docs/reference/mt_length_normalize.html @@ -18,7 +18,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_map.html b/docs/reference/mt_map.html index c94435a..d2e01e9 100644 --- a/docs/reference/mt_map.html +++ b/docs/reference/mt_map.html @@ -20,7 +20,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_measures.html b/docs/reference/mt_measures.html index b61506b..2a4e024 100644 --- a/docs/reference/mt_measures.html +++ b/docs/reference/mt_measures.html @@ -23,7 +23,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_plot.html b/docs/reference/mt_plot.html index 8012f50..694bd6d 100644 --- a/docs/reference/mt_plot.html +++ b/docs/reference/mt_plot.html @@ -22,7 +22,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_plot_add_rect.html b/docs/reference/mt_plot_add_rect.html index e14ed9d..383172a 100644 --- a/docs/reference/mt_plot_add_rect.html +++ b/docs/reference/mt_plot_add_rect.html @@ -20,7 +20,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_plot_per_trajectory.html b/docs/reference/mt_plot_per_trajectory.html index 57b9a9f..dabefff 100644 --- a/docs/reference/mt_plot_per_trajectory.html +++ b/docs/reference/mt_plot_per_trajectory.html @@ -22,7 +22,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_plot_riverbed.html b/docs/reference/mt_plot_riverbed.html index 1a1e4d3..6e0a43b 100644 --- a/docs/reference/mt_plot_riverbed.html +++ b/docs/reference/mt_plot_riverbed.html @@ -18,7 +18,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_prototypes.html b/docs/reference/mt_prototypes.html index d54b337..c6cbb32 100644 --- a/docs/reference/mt_prototypes.html +++ b/docs/reference/mt_prototypes.html @@ -20,7 +20,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_qeffect.html b/docs/reference/mt_qeffect.html index 489a277..0d4ea5d 100644 --- a/docs/reference/mt_qeffect.html +++ b/docs/reference/mt_qeffect.html @@ -18,7 +18,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_remap_symmetric.html b/docs/reference/mt_remap_symmetric.html index e363411..69bdf50 100644 --- a/docs/reference/mt_remap_symmetric.html +++ b/docs/reference/mt_remap_symmetric.html @@ -19,7 +19,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_resample.html b/docs/reference/mt_resample.html index 7b043f3..c3b39e8 100644 --- a/docs/reference/mt_resample.html +++ b/docs/reference/mt_resample.html @@ -19,7 +19,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_reshape.html b/docs/reference/mt_reshape.html index eb1ecb0..3ab6f15 100644 --- a/docs/reference/mt_reshape.html +++ b/docs/reference/mt_reshape.html @@ -21,7 +21,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_sample_entropy.html b/docs/reference/mt_sample_entropy.html index 0dfc3ab..64732f6 100644 --- a/docs/reference/mt_sample_entropy.html +++ b/docs/reference/mt_sample_entropy.html @@ -18,7 +18,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_scale_trajectories.html b/docs/reference/mt_scale_trajectories.html index f99d64a..d770e84 100644 --- a/docs/reference/mt_scale_trajectories.html +++ b/docs/reference/mt_scale_trajectories.html @@ -18,7 +18,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_spatialize.html b/docs/reference/mt_spatialize.html index c5958db..000ca60 100644 --- a/docs/reference/mt_spatialize.html +++ b/docs/reference/mt_spatialize.html @@ -21,7 +21,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_standardize.html b/docs/reference/mt_standardize.html index 86dee8d..834d4d4 100644 --- a/docs/reference/mt_standardize.html +++ b/docs/reference/mt_standardize.html @@ -20,7 +20,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_subset.html b/docs/reference/mt_subset.html index 1325dc0..aed4a7e 100644 --- a/docs/reference/mt_subset.html +++ b/docs/reference/mt_subset.html @@ -19,7 +19,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/mt_time_normalize.html b/docs/reference/mt_time_normalize.html index 2aecb35..cd1918f 100644 --- a/docs/reference/mt_time_normalize.html +++ b/docs/reference/mt_time_normalize.html @@ -21,7 +21,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/print.mt_heatmap_raw.html b/docs/reference/print.mt_heatmap_raw.html index 9c19152..5e97692 100644 --- a/docs/reference/print.mt_heatmap_raw.html +++ b/docs/reference/print.mt_heatmap_raw.html @@ -17,7 +17,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/read_mt.html b/docs/reference/read_mt.html index 788e626..3a02f71 100644 --- a/docs/reference/read_mt.html +++ b/docs/reference/read_mt.html @@ -26,7 +26,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/reexports.html b/docs/reference/reexports.html index c6a5df6..154e9dd 100644 --- a/docs/reference/reexports.html +++ b/docs/reference/reexports.html @@ -24,7 +24,7 @@ mousetrap - 3.2.2 + 3.2.3 diff --git a/docs/reference/scale_within.html b/docs/reference/scale_within.html index 8a99342..a0816b4 100644 --- a/docs/reference/scale_within.html +++ b/docs/reference/scale_within.html @@ -21,7 +21,7 @@ mousetrap - 3.2.2 + 3.2.3