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This repository has been archived by the owner on Mar 16, 2022. It is now read-only.
Hi,
Could you please add an argument for DB rather use a hardcoded path?
fc_ovlp_stats --stream --n_core 4 --fofn preads_lasfiles.fofn --min_len 6973 > ovlp.stats
[12684]u'LA4Falcon -mo ../1-preads_ovl/preads.db assemblyDB.129.las'
raise value
Exception: Traceback (most recent call last):
File "/lustre/work-lustre/waterhouse_team/apps/FALCON-integrate/FALCON/falcon_kit/util/io.py", line 60, in run_func
ret = func(*args)
File "/lustre/work-lustre/waterhouse_team/apps/FALCON-integrate/FALCON/falcon_kit/mains/ovlp_stats.py", line 70, in run_filter_stats
return fn, filter_stats(reader.readlines, min_len)
File "/lustre/work-lustre/waterhouse_team/apps/FALCON-integrate/FALCON/falcon_kit/util/io.py", line 148, in __exit__
raise Exception(msg)
Exception: 1 <- u'LA4Falcon -mo ../1-preads_ovl/preads.db assemblyDB.6.las'
LA4Falcon: Could not open database ../1-preads_ovl/preads.db
LA4Falcon: Could not open database ../1-preads_ovl/preads.db
LA4Falcon: Could not open database ../1-preads_ovl/preads.db
LA4Falcon: Could not open database ../1-preads_ovl/preads.db
Thank you in advance.
Michal
The text was updated successfully, but these errors were encountered:
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Hi,
Could you please add an argument for DB rather use a hardcoded path?
Thank you in advance.
Michal
The text was updated successfully, but these errors were encountered: