requirements.txt

# This file may be used to create an environment using:
# $ conda create --name <env> --file <this file>
# platform: linux-64
_libgcc_mutex=0.1=conda_forge
_openmp_mutex=4.5=1_gnu
_r-mutex=1.0.1=anacondar_1
absl-py=0.13.0=pypi_0
aioeasywebdav=2.4.0=py39hf3d152e_1001
aiohttp=3.7.4.post0=py39h3811e60_0
alsa-lib=1.2.3=h516909a_0
amply=0.1.4=py_0
anndata=0.7.6=pypi_0
anyio=3.3.0=py39hf3d152e_0
appdirs=1.4.4=pyh9f0ad1d_0
argon2-cffi=20.1.0=py39h3811e60_2
arpack=3.7.0=hdefa2d7_2
astunparse=1.6.3=pypi_0
async-timeout=3.0.1=py_1000
async_generator=1.10=py_0
atk-1.0=2.36.0=h3371d22_4
attmap=0.13.0=pyhd8ed1ab_0
attrs=21.2.0=pyhd8ed1ab_0
babel=2.9.1=pyh44b312d_0
backcall=0.2.0=pyh9f0ad1d_0
backports=1.0=py_2
backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
bcrypt=3.2.0=py39h3811e60_1
binutils_impl_linux-64=2.36.1=h193b22a_2
binutils_linux-64=2.36=hf3e587d_1
bleach=4.1.0=pyhd8ed1ab_0
blosc=1.21.0=h9c3ff4c_0
boto3=1.18.44=pyhd8ed1ab_0
botocore=1.21.44=pyhd8ed1ab_0
brotlipy=0.7.0=py39h3811e60_1001
bwidget=1.9.14=ha770c72_0
bzip2=1.0.8=h7f98852_4
c-ares=1.17.2=h7f98852_0
ca-certificates=2021.10.8=ha878542_0
cachetools=4.2.2=pyhd8ed1ab_0
cairo=1.16.0=h6cf1ce9_1008
certifi=2021.10.8=py39hf3d152e_0
cffi=1.15.0=pypi_0
chardet=4.0.0=py39hf3d152e_1
charset-normalizer=2.0.5=pypi_0
chi2comb=0.1.0=pypi_0
chiscore=0.2.3=pypi_0
clang=5.0=pypi_0
cloudpickle=2.0.0=pypi_0
coincbc=2.10.5=hcee13e7_1
configargparse=1.5.2=pyhd8ed1ab_0
connection_pool=0.0.3=pyhd3deb0d_0
cryptography=3.4.7=py39hbca0aa6_0
curl=7.79.0=hea6ffbf_0
cycler=0.10.0=py_2
dask=2021.9.1=pypi_0
dataclasses=0.6=pypi_0
datrie=0.8.2=py39h3811e60_2
dbus=1.13.6=h48d8840_2
debugpy=1.4.1=py39he80948d_0
decorator=5.1.0=pyhd8ed1ab_0
defusedxml=0.7.1=pyhd8ed1ab_0
deprecated=1.2.13=pypi_0
dm-tree=0.1.6=pypi_0
docutils=0.17.1=py39hf3d152e_0
dropbox=11.19.0=pyhd8ed1ab_0
entrypoints=0.3=py39hde42818_1002
expat=2.4.1=h9c3ff4c_0
fftw=3.3.10=nompi_hcdd671c_100
filechunkio=1.8=py_2
filelock=3.0.12=pyh9f0ad1d_0
flatbuffers=1.12=pypi_0
font-ttf-dejavu-sans-mono=2.37=hab24e00_0
font-ttf-inconsolata=3.000=h77eed37_0
font-ttf-source-code-pro=2.038=h77eed37_0
font-ttf-ubuntu=0.83=hab24e00_0
fontconfig=2.13.1=hba837de_1005
fonts-conda-ecosystem=1=0
fonts-conda-forge=1=0
freetype=2.10.4=h0708190_1
fribidi=1.0.10=h36c2ea0_0
fsspec=2021.8.1=pypi_0
ftputil=5.0.1=pyhd8ed1ab_0
gast=0.4.0=pypi_0
gcc_impl_linux-64=9.4.0=h03d3576_11
gcc_linux-64=9.4.0=h391b98a_1
gdk-pixbuf=2.42.6=h04a7f16_0
gettext=0.19.8.1=h73d1719_1006
gfortran_impl_linux-64=9.4.0=h0003116_11
gfortran_linux-64=9.4.0=hf0ab688_1
ghostscript=9.54.0=h9c3ff4c_1
giflib=5.2.1=h36c2ea0_2
gitdb=4.0.7=pyhd8ed1ab_0
gitpython=3.1.23=pyhd8ed1ab_1
glib=2.68.4=h9c3ff4c_1
glib-tools=2.68.4=h9c3ff4c_1
glpk=4.65=h9202a9a_1004
gmp=6.2.1=h58526e2_0
google-api-core=1.31.2=pyhd8ed1ab_0
google-api-python-client=2.21.0=pyhd8ed1ab_0
google-auth=1.35.0=pyh6c4a22f_0
google-auth-httplib2=0.1.0=pyhd8ed1ab_0
google-auth-oauthlib=0.4.6=pypi_0
google-cloud-core=1.7.2=pyh6c4a22f_0
google-cloud-storage=1.42.0=pyh6c4a22f_0
google-crc32c=1.1.2=py39hb81f231_0
google-pasta=0.2.0=pypi_0
google-resumable-media=2.0.2=pyh6c4a22f_0
googleapis-common-protos=1.53.0=py39hf3d152e_0
gpflow=2.1.3=pypi_0
graphite2=1.3.13=h58526e2_1001
graphviz=2.49.0=h85b4f2f_0
grpcio=1.40.0=pypi_0
gsl=2.7=he838d99_0
gst-plugins-base=1.18.5=hf529b03_0
gstreamer=1.18.5=h76c114f_0
gtk2=2.24.33=h539f30e_1
gts=0.7.6=h64030ff_2
gxx_impl_linux-64=9.4.0=h03d3576_11
gxx_linux-64=9.4.0=h0316aca_1
h5py=3.1.0=pypi_0
harfbuzz=2.9.1=h83ec7ef_0
hdf5=1.12.1=nompi_h2750804_100
httplib2=0.19.1=pyhd8ed1ab_0
icu=68.1=h58526e2_0
idna=3.2=pypi_0
igraph=0.9.4=ha184e22_0
imagemagick=7.1.0_8=pl5321hb118871_0
importlib-metadata=4.8.1=py39hf3d152e_0
iniconfig=1.1.1=pyh9f0ad1d_0
ipykernel=6.4.1=py39hef51801_0
ipython=7.27.0=py39hef51801_0
ipython_genutils=0.2.0=py_1
jbig=2.1=h7f98852_2003
jedi=0.18.0=py39hf3d152e_2
jinja2=3.0.2=pypi_0
jmespath=0.10.0=pyh9f0ad1d_0
joblib=1.0.1=pyhd8ed1ab_0
jpeg=9d=h36c2ea0_0
json5=0.9.5=pyh9f0ad1d_0
jsonschema=3.2.0=pyhd8ed1ab_3
jupyter_client=7.0.2=pyhd8ed1ab_0
jupyter_core=4.7.1=py39hf3d152e_0
jupyter_server=1.11.0=pyhd8ed1ab_0
jupyterlab=3.1.12=pyhd8ed1ab_0
jupyterlab_pygments=0.1.2=pyh9f0ad1d_0
jupyterlab_server=2.8.1=pyhd8ed1ab_0
keras=2.6.0=pypi_0
keras-preprocessing=1.1.2=pypi_0
kernel-headers_linux-64=2.6.32=he073ed8_14
kiwisolver=1.3.2=py39h1a9c180_0
krb5=1.19.2=hcc1bbae_0
lcms2=2.12=hddcbb42_0
ld_impl_linux-64=2.36.1=hea4e1c9_2
leidenalg=0.8.7=py39he80948d_0
lerc=2.2.1=h9c3ff4c_0
libblas=3.9.0=11_linux64_openblas
libcblas=3.9.0=11_linux64_openblas
libclang=11.1.0=default_ha53f305_1
libcrc32c=1.1.1=h9c3ff4c_2
libcurl=7.79.0=h2574ce0_0
libdeflate=1.7=h7f98852_5
libedit=3.1.20191231=he28a2e2_2
libev=4.33=h516909a_1
libevent=2.1.10=hcdb4288_3
libffi=3.4.2=h9c3ff4c_1
libgcc-devel_linux-64=9.4.0=hd854feb_11
libgcc-ng=11.2.0=h1d223b6_8
libgd=2.3.2=h78a0170_0
libgfortran-ng=11.2.0=h69a702a_8
libgfortran5=11.2.0=h5c6108e_8
libglib=2.68.4=h174f98d_1
libgomp=11.2.0=h1d223b6_8
libiconv=1.16=h516909a_0
liblapack=3.9.0=11_linux64_openblas
libllvm11=11.1.0=hf817b99_2
libnghttp2=1.43.0=h812cca2_0
libogg=1.3.4=h7f98852_1
libopenblas=0.3.17=pthreads_h8fe5266_1
libopus=1.3.1=h7f98852_1
libpng=1.6.37=h21135ba_2
libpq=13.3=hd57d9b9_0
libprotobuf=3.18.0=h780b84a_0
librsvg=2.50.7=hc3c00ef_0
libsanitizer=9.4.0=h79bfe98_11
libsodium=1.0.18=h36c2ea0_1
libssh2=1.10.0=ha56f1ee_0
libstdcxx-devel_linux-64=9.4.0=hd854feb_11
libstdcxx-ng=11.2.0=he4da1e4_8
libtiff=4.3.0=hf544144_1
libtool=2.4.6=h9c3ff4c_1008
libuuid=2.32.1=h7f98852_1000
libvorbis=1.3.7=h9c3ff4c_0
libwebp=1.2.1=h3452ae3_0
libwebp-base=1.2.1=h7f98852_0
libxcb=1.13=h7f98852_1003
libxkbcommon=1.0.3=he3ba5ed_0
libxml2=2.9.12=h72842e0_0
llvmlite=0.37.0=py39h1bbdace_0
locket=0.2.1=pypi_0
logmuse=0.2.6=pyh8c360ce_0
lz4-c=1.9.3=h9c3ff4c_1
lzo=2.10=h516909a_1000
make=4.3=hd18ef5c_1
markdown=3.3.4=pypi_0
markupsafe=2.0.1=py39h3811e60_0
matplotlib=3.4.3=py39hf3d152e_0
matplotlib-base=3.4.3=py39h2fa2bec_0
matplotlib-inline=0.1.3=pyhd8ed1ab_0
metis=5.1.0=h58526e2_1006
mistune=0.8.4=py39h3811e60_1004
mock=4.0.3=py39hf3d152e_1
more-itertools=8.10.0=pyhd8ed1ab_0
mpfr=4.1.0=h9202a9a_1
multidict=5.1.0=py39h3811e60_1
multipledispatch=0.6.0=pypi_0
mysql-common=8.0.25=ha770c72_2
mysql-libs=8.0.25=hfa10184_2
natsort=7.1.1=pypi_0
nbclassic=0.3.1=pyhd8ed1ab_1
nbclient=0.5.4=pyhd8ed1ab_0
nbconvert=6.1.0=py39hf3d152e_1
nbformat=5.1.3=pyhd8ed1ab_0
ncurses=6.2=h58526e2_4
nest-asyncio=1.5.1=pyhd8ed1ab_0
networkx=2.6.3=pypi_0
notebook=6.4.4=pyha770c72_0
nspr=4.30=h9c3ff4c_0
nss=3.69=hb5efdd6_0
numba=0.54.0=py39h56b8d98_0
numexpr=2.7.3=py39hde0f152_0
numpy=1.19.5=pypi_0
numpy-sugar=1.5.3=pypi_0
oauth2client=4.1.3=py_0
oauthlib=3.1.1=pypi_0
olefile=0.46=pyh9f0ad1d_1
openjpeg=2.4.0=hb52868f_1
openssl=1.1.1l=h7f98852_0
opt-einsum=3.3.0=pypi_0
packaging=21.0=pyhd8ed1ab_0
pandas=1.3.3=py39hde0f152_0
pandoc=2.14.2=h7f98852_0
pandocfilters=1.5.0=pyhd8ed1ab_0
pango=1.48.10=hb8ff022_0
paramiko=2.7.2=pyh9f0ad1d_0
parso=0.8.2=pyhd8ed1ab_0
partd=1.2.0=pypi_0
patsy=0.5.1=py_0
pcre=8.45=h9c3ff4c_0
pcre2=10.37=h032f7d1_0
peppy=0.31.1=pyhd8ed1ab_0
perl=5.32.1=0_h7f98852_perl5
pexpect=4.8.0=pyh9f0ad1d_2
pickleshare=0.7.5=py39hde42818_1002
pillow=8.3.2=py39ha612740_0
pip=21.2.4=pyhd8ed1ab_0
pixman=0.40.0=h36c2ea0_0
pkg-config=0.29.2=h36c2ea0_1008
pluggy=1.0.0=py39hf3d152e_1
ply=3.11=py_1
prettytable=2.2.0=pyhd8ed1ab_0
prometheus_client=0.11.0=pyhd8ed1ab_0
prompt-toolkit=3.0.20=pyha770c72_0
protobuf=3.18.0=pypi_0
psutil=5.8.0=py39h3811e60_1
pthread-stubs=0.4=h36c2ea0_1001
ptyprocess=0.7.0=pyhd3deb0d_0
pulp=2.5.0=py39hf3d152e_0
py=1.10.0=pyhd3deb0d_0
pyasn1=0.4.8=py_0
pyasn1-modules=0.2.8=pypi_0
pycparser=2.20=pyh9f0ad1d_2
pygments=2.10.0=pyhd8ed1ab_0
pygraphviz=1.7=py39h78163bd_0
pynacl=1.4.0=py39h3811e60_2
pynndescent=0.5.4=pypi_0
pyopenssl=20.0.1=pyhd8ed1ab_0
pyparsing=2.4.7=pyh9f0ad1d_0
pyqt=5.12.3=py39hf3d152e_7
pyqt-impl=5.12.3=py39h0fcd23e_7
pyqt5-sip=4.19.18=py39he80948d_7
pyqtchart=5.12=py39h0fcd23e_7
pyqtwebengine=5.12.1=py39h0fcd23e_7
pyrsistent=0.17.3=py39h3811e60_2
pysftp=0.2.9=py_1
pysocks=1.7.1=py39hf3d152e_3
pytables=3.6.1=py39h2669a42_4
pytest=6.2.5=pypi_0
pytest-doctestplus=0.10.1=pypi_0
python=3.9.7=hb7a2778_1_cpython
python-dateutil=2.8.2=pyhd8ed1ab_0
python-igraph=0.9.6=py39hfef886c_0
python-irodsclient=1.0.0=pyhd8ed1ab_0
python_abi=3.9=2_cp39
pytz=2021.3=pypi_0
pyu2f=0.1.5=pyhd8ed1ab_0
pyyaml=5.4.1=py39h3811e60_1
pyzmq=22.2.1=py39h37b5a0c_0
qt=5.12.9=hda022c4_4
r-base=4.1.1=hb93adac_1
ratelimiter=1.2.0=py_1002
readline=8.1=h46c0cb4_0
requests=2.26.0=pyhd8ed1ab_0
requests-oauthlib=1.3.0=pypi_0
requests-unixsocket=0.2.0=py_0
rpy2=3.4.5=pypi_0
rsa=4.7.2=pyh44b312d_0
s3transfer=0.5.0=pyhd8ed1ab_0
scanpy=1.8.1=pypi_0
scdali=0.1.0=pypi_0
scikit-learn=0.24.2=py39h7c5d8c9_1
scipy=1.7.1=py39hee8e79c_0
seaborn=0.11.2=hd8ed1ab_0
seaborn-base=0.11.2=pyhd8ed1ab_0
sed=4.8=he412f7d_0
send2trash=1.8.0=pyhd8ed1ab_0
setuptools=58.0.4=py39hf3d152e_0
setuptools-scm=6.3.2=pypi_0
simplejson=3.17.5=py39h3811e60_0
sinfo=0.3.4=pypi_0
six=1.15.0=pypi_0
slacker=0.14.0=py_0
smart_open=5.2.1=pyhd8ed1ab_0
smmap=3.0.5=pyh44b312d_0
snakemake=6.8.0=hdfd78af_0
snakemake-minimal=6.8.0=pyhdfd78af_0
sniffio=1.2.0=py39hf3d152e_1
sqlite=3.36.0=h9cd32fc_1
statsmodels=0.12.2=py39hce5d2b2_0
stdlib-list=0.8.0=pypi_0
stone=3.2.1=pyhd8ed1ab_0
stopit=1.1.2=py_0
suitesparse=5.10.1=h9e50725_1
sysroot_linux-64=2.12=he073ed8_14
tabulate=0.8.9=pyhd8ed1ab_0
tbb=2021.3.0=h4bd325d_0
tensorboard=2.6.0=pypi_0
tensorboard-data-server=0.6.1=pypi_0
tensorboard-plugin-wit=1.8.0=pypi_0
tensorflow=2.6.0=pypi_0
tensorflow-estimator=2.6.0=pypi_0
tensorflow-probability=0.14.0=pypi_0
termcolor=1.1.0=pypi_0
terminado=0.12.1=py39hf3d152e_0
testpath=0.5.0=pyhd8ed1ab_0
texttable=1.6.4=pyhd8ed1ab_0
threadpoolctl=2.2.0=pyh8a188c0_0
tk=8.6.11=h27826a3_1
tktable=2.10=hb7b940f_3
toml=0.10.2=pyhd8ed1ab_0
tomli=1.2.2=pypi_0
toolz=0.11.1=pypi_0
toposort=1.6=pyhd8ed1ab_0
tornado=6.1=py39h3811e60_1
tqdm=4.62.2=pypi_0
traitlets=5.1.0=pyhd8ed1ab_0
typing-extensions=3.7.4.3=pypi_0
tzdata=2021a=he74cb21_1
tzlocal=3.0=pypi_0
ubiquerg=0.6.1=pyh9f0ad1d_0
umap-learn=0.5.1=pypi_0
uritemplate=3.0.1=py_0
urllib3=1.26.6=pyhd8ed1ab_0
veracitools=0.1.3=py_0
wcwidth=0.2.5=pyh9f0ad1d_2
webencodings=0.5.1=py_1
websocket-client=0.57.0=py39hf3d152e_4
werkzeug=2.0.1=pypi_0
wheel=0.37.0=pyhd8ed1ab_1
wrapt=1.12.1=py39h3811e60_3
xlrd=1.2.0=pypi_0
xmlrunner=1.7.7=py_0
xorg-kbproto=1.0.7=h7f98852_1002
xorg-libice=1.0.10=h7f98852_0
xorg-libsm=1.2.3=hd9c2040_1000
xorg-libx11=1.7.2=h7f98852_0
xorg-libxau=1.0.9=h7f98852_0
xorg-libxdmcp=1.1.3=h7f98852_0
xorg-libxext=1.3.4=h7f98852_1
xorg-libxrender=0.9.10=h7f98852_1003
xorg-libxt=1.2.1=h7f98852_2
xorg-renderproto=0.11.1=h7f98852_1002
xorg-xextproto=7.3.0=h7f98852_1002
xorg-xproto=7.0.31=h7f98852_1007
xz=5.2.5=h516909a_1
yaml=0.2.5=h516909a_0
yarl=1.5.1=py39h07f9747_0
zeromq=4.3.4=h9c3ff4c_1
zipp=3.5.0=pyhd8ed1ab_0
zlib=1.2.11=h516909a_1010
zstd=1.5.0=ha95c52a_0