NTR: oxidative burst present / absent

[CuzickA]

Needed for curating PMID:22241993 Fig 9 PHI-base/curation#22

GO has 'respiratory burst' exact synonym 'oxidative burst'
https://www.ebi.ac.uk/QuickGO/term/GO:0045730

Also 'respiratory burst involved in defense response'
https://www.ebi.ac.uk/QuickGO/term/GO:0002679

[CuzickA]

New terms added to phipo under pathogen host interaction phenotype branch

Current text definition for 'pathogen host interaction respiratory burst phenotype' adapted from GO term
(other text definitions not created yet)

[ValWood]

GO:0002679 burst involved in defense response

PHIPO: pathogen-host interaction oxidative burst phenotype
PHIPO: pathogen-host interaction respiratory burst phenotype (synonym)

A pathogen host interaction phenotype where a phase of elevated metabolic activity, during which oxygen consumption increases made as part of a defense response *is elicited by the host

; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals.

[ValWood]

i Change term names to use "oxidative' done
ii) add "respiratory" synonyms done
iii) Change logical defs to use GO:0002679 respiratory burst involved in defense response added to GO_terms.txt to incorporate into log def in future
iv) refine text def to mak it clear that the oxidative busts is from the host. draft done
v) remove abnormal and normal grouping terms done
vi) remove increased/decreased/abolished ox burst terms until required for annotating a publication done

[CuzickA]

Current ox burst phenotypes in phipo

Draft text definitions -these may still need some work

[CuzickA]

Closing ticket