From e28f392141dee244b8aad76aa5a5782d94d4a921 Mon Sep 17 00:00:00 2001 From: Filippo Ledda Date: Fri, 23 Dec 2022 15:12:08 +0100 Subject: [PATCH 1/4] Netpyne update --- applications/jupyterlab/Dockerfile | 2 +- applications/netpyne/Dockerfile | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/applications/jupyterlab/Dockerfile b/applications/jupyterlab/Dockerfile index c21c6d63..8f329283 100644 --- a/applications/jupyterlab/Dockerfile +++ b/applications/jupyterlab/Dockerfile @@ -41,7 +41,7 @@ RUN jupyter labextension install plotlywidget # this will cause the libs to get updated and use the cached dependencies # Invalidate the cache -ARG NOCACHE +# ARG NOCACHE USER root # LFPy diff --git a/applications/netpyne/Dockerfile b/applications/netpyne/Dockerfile index 870046f0..34b17883 100644 --- a/applications/netpyne/Dockerfile +++ b/applications/netpyne/Dockerfile @@ -2,7 +2,7 @@ FROM node:13.14 as jsbuild ENV REPO=https://github.com/MetaCell/NetPyNE-UI.git ENV BRANCH_TAG=osb2-dev ENV FOLDER=netpyne -RUN echo "no-cache 2022-08-26" +RUN echo "no-cache 2022-12-23" RUN git clone $REPO -b $BRANCH_TAG $FOLDER RUN rm -Rf .git From 4ef62a4b774def7bc0c9f22a7bdffbf0f2fb5ee0 Mon Sep 17 00:00:00 2001 From: Filippo Ledda Date: Mon, 9 Jan 2023 16:49:31 +0100 Subject: [PATCH 2/4] Netpyne-ui update to 0.9.1 --- applications/netpyne/Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/applications/netpyne/Dockerfile b/applications/netpyne/Dockerfile index 34b17883..a92ce648 100644 --- a/applications/netpyne/Dockerfile +++ b/applications/netpyne/Dockerfile @@ -2,7 +2,7 @@ FROM node:13.14 as jsbuild ENV REPO=https://github.com/MetaCell/NetPyNE-UI.git ENV BRANCH_TAG=osb2-dev ENV FOLDER=netpyne -RUN echo "no-cache 2022-12-23" +RUN echo "no-cache 2023-1-9" RUN git clone $REPO -b $BRANCH_TAG $FOLDER RUN rm -Rf .git From efaa5ab5495ee9ddd32066065b2c293453f3ee32 Mon Sep 17 00:00:00 2001 From: Filippo Ledda Date: Mon, 16 Jan 2023 19:03:38 +0100 Subject: [PATCH 3/4] Set user volume to writemany --- applications/jupyterhub/deploy/values.yaml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/applications/jupyterhub/deploy/values.yaml b/applications/jupyterhub/deploy/values.yaml index 67f65220..3c3812b9 100755 --- a/applications/jupyterhub/deploy/values.yaml +++ b/applications/jupyterhub/deploy/values.yaml @@ -46,10 +46,13 @@ singleuser: storage: type: dynamic capacity: 2Mi + dynamic: pvcNameTemplate: osb-user-{userid} volumeNameTemplate: osb-user-{userid} storageClass: "{{namespace}}-nfs-client" + storageAccessModes: + - "ReadWriteMany" homeMountPath: /opt/user extraLabels: {} cpu: From 4228047d883b9d33bbd778d621ab1627931fe06b Mon Sep 17 00:00:00 2001 From: Filippo Ledda Date: Tue, 24 Jan 2023 11:12:46 +0100 Subject: [PATCH 4/4] Update sklearn to scikit-learn on jlab --- applications/jupyterhub/kubespawner | 1 + applications/jupyterlab/requirements.txt | 2 +- 2 files changed, 2 insertions(+), 1 deletion(-) create mode 160000 applications/jupyterhub/kubespawner diff --git a/applications/jupyterhub/kubespawner b/applications/jupyterhub/kubespawner new file mode 160000 index 00000000..8942af43 --- /dev/null +++ b/applications/jupyterhub/kubespawner @@ -0,0 +1 @@ +Subproject commit 8942af43f3a5eb951b41c3012c52b301d9ed6655 diff --git a/applications/jupyterlab/requirements.txt b/applications/jupyterlab/requirements.txt index 27153324..5fd4862f 100644 --- a/applications/jupyterlab/requirements.txt +++ b/applications/jupyterlab/requirements.txt @@ -49,7 +49,7 @@ protobuf==3.17.0 git+https://github.com/SheffieldML/GPy.git@devel #modeci_mdf==0.3.3 # big jump in size of image... -sklearn # Required for some Neuromatch Academy material +scikit-learn # Required for some Neuromatch Academy material fasttext # Required for some Neuromatch Academy material