Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Imported observers not supported? #65

Closed
PavelBal opened this issue May 15, 2020 · 5 comments
Closed

Imported observers not supported? #65

PavelBal opened this issue May 15, 2020 · 5 comments
Assignees

Comments

@PavelBal
Copy link
Member

I have created an observer and loaded it in PK-Sim. I then try to map the output of this observer to data in the qualification plan (let's say the observer is called Observer Plasma (Peripheral Venous Blood)):

                            {
                                "Project": "MyProject",
                                "Simulation": "mySim",
                                "Output": "Organism|PeripheralVenousBlood|Compoound|Observer Plasma (Peripheral Venous Blood)",
                                "ObservedData": "SomeDatta",
                                "Color": "#b2182b"
                            },

I get warnings:

warn: MyProject[0] 
      Could not find quantity with path 'mySim|Organism|PeripheralVenousBlood|Compoound|Observer Plasma (Peripheral Venous Blood)'. 

Exporting the corresponding simulation to PKML and trying the access the observer from R works (I copy-pasted the path from the error message too make sure there is no typo).

@msevestre
Copy link
Member

Observers are not supported in snapshot yet. Therefore they will not be in the project created from snapshot

@msevestre
Copy link
Member

@msevestre
Copy link
Member

This is indeed an issue :)

@msevestre
Copy link
Member

FYI: I'll probably have a fix for this by Friday

@msevestre msevestre self-assigned this May 21, 2020
@Yuri05
Copy link
Member

Yuri05 commented Jun 2, 2020

should be fixed with Open-Systems-Pharmacology/PK-Sim#1359

@Yuri05 Yuri05 closed this as completed Jun 2, 2020
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

3 participants