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nPhase is too slow/memory intensive #11

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OmarOakheart opened this issue Oct 2, 2021 · 1 comment
Open

nPhase is too slow/memory intensive #11

OmarOakheart opened this issue Oct 2, 2021 · 1 comment

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@OmarOakheart
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Right now nPhase is deterministic, meaning it doesn't use any useful time-saving heuristics. It also makes no use of parallelization. Generally it isn't optimized. It would be good to work on these points to make it more appropriate for use on larger/more heterozygous genomes.
@OmarOakheart OmarOakheart mentioned this issue Oct 13, 2021
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@rmormando rmormando mentioned this issue Sep 22, 2022
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@OmarOakheart
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Note that as of v1.2.0 several optimization steps have been implemented, including parallelization of some steps, though more can always be done.

@OmarOakheart OmarOakheart reopened this Sep 22, 2022
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@OmarOakheart