DESCRIPTION

Package: PhenotypeR
Type: Package
Title: Assess Study Cohorts Using a Common Data Model
Version: 0.1.0
Authors@R: c(
    person("Edward", "Burn", , "edward.burn@ndorms.ox.ac.uk", 
    role = c("aut", "cre"), comment = c(ORCID = "0000-0002-9286-1128")),
    person("Marti", "Catala", , "marti.catalasabate@ndorms.ox.ac.uk", 
    role = c("aut"), comment = c(ORCID = "0000-0003-3308-9905")),
    person("Xihang", "Chen", , "xihang.chen@ndorms.ox.ac.uk", 
    role = c("aut"), comment = c(ORCID = "0009-0001-8112-8959")),
    person("Marta", "Alcalde-Herraiz", , "marta.alcaldeherraiz@ndorms.ox.ac.uk", 
    role = c("aut"), comment = c(ORCID = "0009-0002-4405-1814")),
    person("Albert", "Prats-Uribe", , "albert.prats-uribe@ndorms.ox.ac.uk", 
    role = "aut", comment = c(ORCID = "0000-0003-1202-9153")))
Description: Phenotype study cohorts in data mapped to the 
    Observational Medical Outcomes Partnership Common Data Model. Diagnostics 
    are run at the database, code list, cohort, and population level to assess 
    whether study cohorts are ready for research.
License: Apache License (>= 2)
Encoding: UTF-8
LazyData: true
Depends:
    R (>= 4.0)
Suggests: 
    CDMConnector (>= 1.6.1),
    duckdb,
    DBI,
    gt,
    omock,
    testthat (>= 3.0.0),
    knitr,
    visOmopResults (>= 0.5.0),
    glue,
    RPostgres,
    PatientProfiles (>= 1.2.2),
    ggplot2,
    ggpubr,
    stringr,
    shiny,
    DiagrammeR,
    sortable,
    shinycssloaders,
    here,
    DT,
    bslib,
    shinyWidgets,
    plotly,
    tidyr,
    scales
Config/testthat/edition: 3
RoxygenNote: 7.3.2
Imports: 
    CodelistGenerator (>=	3.3.1),
    CohortCharacteristics (>= 0.4.0),
    CohortConstructor (>= 0.3.2),
    cli,
    dplyr,
    IncidencePrevalence (>= 0.9.0),
    omopgenerics (>= 0.4.0),
    OmopSketch (>= 0.1.2),
    magrittr,
    purrr,
    rlang,
    vctrs,
    usethis
URL: https://ohdsi.github.io/PhenotypeR/
VignetteBuilder: knitr