.gitignore

# History files
.Rhistory
.Rapp.history

# Session Data files
.RData
*~

# Example code in package build process
*-Ex.R

# Output files from R CMD build
/*.tar.gz

# Output files from R CMD check
/*.Rcheck/

# RStudio files
.Rproj.user/

# produced vignettes
vignettes/*.html
vignettes/*.pdf

# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth

# knitr and R markdown default cache directories
/*_cache/
/cache/

# Temporary files created by R markdown
*.utf8.md
*.knit.md
.Rproj.user

# PDI workflow secrets
secret.config
dynamic.config

meshTags/extras/config_patient_data.csv
meshTags/extras/config.csv
meshTags/errorReport.txt
evidenceProcessingClean/errorReport.txt
evidenceProcessingClean/extras/config.csv
evidenceProcessingTranslated/extras/config.csv
evidenceProcessingTranslated/errorReport.txt
postProcessingEvidenceUnify/extras/config.csv
postProcessingEvidenceUnify/errorReport.txt
postProcessingNegativeControls/errorReport.txt
postProcessingNegativeControls/extras/config.csv
postProcessingNegativeControls/extras/config_aps.csv
postProcessingNegativeControls/extras/config_patient_data.csv
postProcessingNegativeControlsPrep/errorReport.txt
postProcessingNegativeControlsPrep/extras/config.csv
postProcessingNegativeControlsPrep/extras/config_ftp.csv
postProcessingNegativeControlsPrep/extras/config_patient_data.csv
postProcessingNegativeControls/NEGATIVE_CONTROLS_*.xlsx
postProcessingNegativeControls/test.sql
postProcessing/extras/config.csv
postProcessing/extras/errorReport.txt

#External apps
informationPrep/jobs/MEDLINE/MedlineXmlToDatabase.jar
informationPrep/jobs/MEDLINE/MedlineXmlToDatabase_lib

#IntelliJ
.idea

#Mac
.DS_Store