BA.2.86* Lineage Tracker

[NkRMnZr]

BA.2.86* Lineage Tracker

L455X

• BA.2.86 > T3454C > A3542G(ORF1a:T1093A), C5672T(ORF1a:P1803S), C9661T, G13427A(ORF1a:E4388K), G22927T(S:L455F) [Query: T3454C, C5672T, G22927T, 11/14] USA/NJ-GBW-H20-338-5612/2023|EPI_ISL_18501267|2023-11-02
• JN.2 > G22927T(S:L455F), C23575T(S:C671C) [Query: A2127G, C12815T, G22927T, 11/14] Canada/ON-PHL-23-39684/2023|EPI_ISL_18505325|2023-11-02
• JN.3.1 > C8836T, G22927T(S:L455F) [Query: C6525T, G22927T, G24328C, Nov18] Spain/PV-HUB-56069831/2023|EPI_ISL_18518960|2023-10-23

F456X

• BA.2.86 > C9050T(ORF1a:P2929S), G11417T(ORF1a:V3718F), C28269T > G2890T, T5165C(ORF1a:Y1634H), C9319T, G13427A(ORF1a:E4388K), T18012C, G22927T(S:L455F), T22929C(S:F456S) [Query: C9050T, G11417T, T22929C, 12/05] USA/NY-GBW-H10-018-4057/2023|EPI_ISL_18588221|2023-11-22
• JN.1 > T27810C(ORF7b:F19L) > C106T, T22928G(S:F456V), A26555G, G27415A(ORF7a:A8T) [Query: T22928G, T27810C, Dec1] Italy/LAZ-UCBM-1995/2023|EPI_ISL_18567735|2023-11-26
• JN.1 > T27810C(ORF7b:F19L) > C1762A(ORF1a:F499L) > C11747T > T3488C > G22104A(S:G181E) > T3723C(ORF1a:I1153T), T22928C(S:F456L) [Query: T3488C, C11747T, T22928C, Nov24] France/IDF-IPP26725/2023|EPI_ISL_18540843|2023-11-06
• JN.3 > C27476T(ORF7a:T28I) > C13721T(ORF1b:P85L), G21666T(S:G35V), T22928C(S:F456L), C24517T(S:D985D), C29085T(N:T271I) [Query: C6525T, C12815T, T22928C, Nov17] Spain/PV-HUB-56068825/2023|EPI_ISL_18514138|2023-10-17

T478X

see sars-cov-2-variants/lineage-proposals#1078

Q613H

RBD Levels

• BA.2.86.1 > C12815T > C7528T > C3619T > C17934A > C5806T, T7621C > A18298C(ORF1b:I1611L) > C22120T(S:F186F), T23042C(S:S494P) [Query: C5806T, A18298C, T23042C, 2, Dec6]
• JN.2 > T12457A > G11291A(ORF1a:G3676S), T11296G(ORF1a:F3677L), T23031C(S:F490S) [Query: A2127G, T12457A, T23031C, 09/19] Sweden/Y-261733494197/2023|EPI_ISL_18281969|2023-08-30

S:A475X via sars-cov-2-variants/lineage-proposals#954

Known Potential Growth Booster

• XBB.2.86.1 > C21721T(S:D53D) > T11614C, T21711C_rev(S:L50S_rev), G21718T(S:Q52H), T21810C(S:V83A) [Query: C12815T, G21718T, C21721T, 11/07] England/CLIMB-CM7YG1ZA/2023|EPI_ISL_18473870|2023-10-27
• JN.3 > C4456T, C19524T, C23277T(S:T572I), C29445T(N:T391I) [Query: C6525T, C12815T, C23277T, 8, Nov13]

FCS & Flanking

Others

• BA.2.86.1 > C22458T(S:T299I) [Query: C12815T, C22458T, T23005A, 24, Nov9]

Large Undesignated Cluster

Local Prevalence

Designated

Inactive