From c8d30c0af9f4b2be3918694b8a9132a235ae975c Mon Sep 17 00:00:00 2001
From: George Huebner <george@feyor.sh>
Date: Thu, 14 Mar 2024 10:02:59 -0400
Subject: [PATCH] sage: drop flintqs

FlintQS is no longer maintained and has several bugs.
As of https://github.com/sagemath/sage/pull/35419, all of FlintQS's
functionality is contained within Sage.
---
 .../science/math/sage/sage-env.nix            |  2 -
 .../science/math/sage/sage-with-env.nix       |  2 -
 .../science/math/flintqs/default.nix          | 40 -------------------
 pkgs/top-level/aliases.nix                    |  1 +
 pkgs/top-level/all-packages.nix               |  2 -
 5 files changed, 1 insertion(+), 46 deletions(-)
 delete mode 100644 pkgs/development/libraries/science/math/flintqs/default.nix

diff --git a/pkgs/applications/science/math/sage/sage-env.nix b/pkgs/applications/science/math/sage/sage-env.nix
index 4f179ea3a42b2..f95e08c51ff4d 100644
--- a/pkgs/applications/science/math/sage/sage-env.nix
+++ b/pkgs/applications/science/math/sage/sage-env.nix
@@ -39,7 +39,6 @@
 , ecm
 , lcalc
 , rubiks
-, flintqs
 , blas
 , lapack
 , flint3
@@ -93,7 +92,6 @@ let
     ecm
     lcalc
     rubiks
-    flintqs
     jdk # only needed for `jmol` which may be replaced in the future
     less # needed to prevent transient test errors until https://github.com/ipython/ipython/pull/11864 is resolved
   ]
diff --git a/pkgs/applications/science/math/sage/sage-with-env.nix b/pkgs/applications/science/math/sage/sage-with-env.nix
index b2c0843d3100a..88c753e89c9da 100644
--- a/pkgs/applications/science/math/sage/sage-with-env.nix
+++ b/pkgs/applications/science/math/sage/sage-with-env.nix
@@ -13,7 +13,6 @@
 , gmp
 , gfan
 , python3
-, flintqs
 , eclib
 , ntl
 , ecm
@@ -40,7 +39,6 @@ let
     gfan
     maxima
     eclib
-    flintqs
     ntl
     ecm
   ];
diff --git a/pkgs/development/libraries/science/math/flintqs/default.nix b/pkgs/development/libraries/science/math/flintqs/default.nix
deleted file mode 100644
index c5426ed67fc7f..0000000000000
--- a/pkgs/development/libraries/science/math/flintqs/default.nix
+++ /dev/null
@@ -1,40 +0,0 @@
-{ lib, stdenv
-, fetchFromGitHub
-, autoreconfHook
-, gmp
-}:
-
-stdenv.mkDerivation rec {
-  version = "1.0";
-  pname = "flintqs";
-
-  src = fetchFromGitHub {
-    owner = "sagemath";
-    repo = "FlintQS";
-    rev = "v${version}";
-    sha256 = "1f0lnayz6j6qgasx8pbq61d2fqam0wwhsmh6h15l4vq58l1vvbwj";
-  };
-
-  preAutoreconf = ''
-    touch ChangeLog
-  '';
-
-  buildInputs = [
-    gmp
-  ];
-
-  nativeBuildInputs = [
-    autoreconfHook
-  ];
-
-  doCheck = true;
-
-  meta = with lib; {
-    description = "Highly optimized multi-polynomial quadratic sieve for integer factorization";
-    homepage = "https://github.com/sagemath/FlintQS";
-    license = with licenses; [ gpl2 ];
-    maintainers = teams.sage.members;
-    mainProgram = "QuadraticSieve";
-    platforms = platforms.all;
-  };
-}
diff --git a/pkgs/top-level/aliases.nix b/pkgs/top-level/aliases.nix
index 1f53f0ebfe7ca..07832f7793f64 100644
--- a/pkgs/top-level/aliases.nix
+++ b/pkgs/top-level/aliases.nix
@@ -316,6 +316,7 @@ mapAliases ({
   fitnesstrax = throw "fitnesstrax was removed from nixpkgs because it disappeared upstream and no longer compiles"; # added 2023-07-04
   flashrom-stable = flashprog;   # Added 2024-03-01
   flatbuffers_2_0 = flatbuffers; # Added 2022-05-12
+  flintqs = throw "FlintQS has been removed due to lack of maintenance and security issues; use SageMath or FLINT instead"; # Added 2024-03-21
   flutter2 = throw "flutter2 has been removed because it isn't updated anymore, and no packages in nixpkgs use it. If you still need it, use flutter.mkFlutter to get a custom version"; # Added 2023-07-03
   flutter37 = throw "flutter37 has been removed because it isn't updated anymore, and no packages in nixpkgs use it. If you still need it, use flutter.mkFlutter to get a custom version"; # Added 2023-07-03
   foldingathome = fahclient; # Added 2020-09-03
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 3c7aa60a14d9e..7fe18427c1de8 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -38513,8 +38513,6 @@ with pkgs;
 
   ecos = callPackage ../development/libraries/science/math/ecos { };
 
-  flintqs = callPackage ../development/libraries/science/math/flintqs { };
-
   getdp = callPackage ../applications/science/math/getdp { };
 
   gurobi = callPackage ../applications/science/math/gurobi {