From ee69ee419bc9afdb9a398f4a53e910f292d3165e Mon Sep 17 00:00:00 2001
From: Marius Bergmann <marius@yeai.de>
Date: Tue, 14 Mar 2017 22:02:43 +0100
Subject: [PATCH 01/41] liquid-dsp: init at 20170307

liquid-dsp is a dependency for the latest git version of inspectrum, therefore I
added it in order to be able to upgrade inspectrum.
---
 .../libraries/liquid-dsp/default.nix          | 23 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 ++
 2 files changed, 25 insertions(+)
 create mode 100644 pkgs/development/libraries/liquid-dsp/default.nix

diff --git a/pkgs/development/libraries/liquid-dsp/default.nix b/pkgs/development/libraries/liquid-dsp/default.nix
new file mode 100644
index 0000000000000..391606d59e689
--- /dev/null
+++ b/pkgs/development/libraries/liquid-dsp/default.nix
@@ -0,0 +1,23 @@
+{stdenv, fetchFromGitHub, autoreconfHook }:
+
+stdenv.mkDerivation rec {
+  name = "liquid-dsp-${version}";
+  version = "20170307";
+
+  src = fetchFromGitHub {
+    owner = "jgaeddert";
+    repo = "liquid-dsp";
+    rev = "8c1978fa4f5662b8849fe712be716958f29cec0e";
+    sha256 = "0zpxvdsrw0vzzp3iaag3wh4z8ygl7fkswgjppp2fz2zhhqh93k2w";
+  };
+
+  nativeBuildInputs = [ autoreconfHook ];
+
+  meta = {
+    homepage = http://liquidsdr.org/;
+    description = "Digital signal processing library for software-defined radios";
+    license = stdenv.lib.licenses.mit;
+    platforms = stdenv.lib.platforms.unix;
+  };
+
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 4a73c033c4ee4..0294b3671484f 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -8865,6 +8865,8 @@ with pkgs;
 
   lirc = callPackage ../development/libraries/lirc { };
 
+  liquid-dsp = callPackage ../development/libraries/liquid-dsp { };
+
   liquidfun = callPackage ../development/libraries/liquidfun { };
 
   live555 = callPackage ../development/libraries/live555 { };

From 2876cd7e98df572b900239539052badcfa44d438 Mon Sep 17 00:00:00 2001
From: Marius Bergmann <marius@yeai.de>
Date: Tue, 14 Mar 2017 22:08:05 +0100
Subject: [PATCH 02/41] inspectrum: 20160403 -> 20170218

---
 pkgs/applications/misc/inspectrum/default.nix | 29 +++++++++++++++----
 1 file changed, 23 insertions(+), 6 deletions(-)

diff --git a/pkgs/applications/misc/inspectrum/default.nix b/pkgs/applications/misc/inspectrum/default.nix
index 536582e4ee714..6ec968ecc94d8 100644
--- a/pkgs/applications/misc/inspectrum/default.nix
+++ b/pkgs/applications/misc/inspectrum/default.nix
@@ -1,18 +1,35 @@
-{ stdenv, fetchFromGitHub, pkgconfig, cmake, boost, fftwFloat, qt5, gnuradio }:
+{ stdenv
+, fetchFromGitHub
+, pkgconfig
+, cmake
+, boost
+, fftwFloat
+, qt5
+, gnuradio
+, liquid-dsp
+}:
 
 stdenv.mkDerivation rec {
   name = "inspectrum-${version}";
-  version = "20160403";
+  version = "20170218";
 
   src = fetchFromGitHub {
     owner = "miek";
     repo = "inspectrum";
-    rev = "27381dbb30f59267a429c04d17d792d3953a6b99";
-    sha256 = "0y4j62khq6fcv2qqlqi0kn2ix821m5gcqzg72nhc2zzfb3cdm9nm";
+    rev = "d8d1969a4cceeee0ebfd2f39e791fddd5155d4de";
+    sha256 = "05sarfin9wqkvgwn3fil1r4bay03cwzzhjwbdjslibc5chdrr2cn";
   };
 
-  buildInputs = [ pkgconfig cmake qt5.qtbase fftwFloat boost gnuradio ];
-  
+  buildInputs = [
+    pkgconfig
+    cmake
+    qt5.qtbase
+    fftwFloat
+    boost
+    gnuradio
+    liquid-dsp
+  ];
+
   meta = with stdenv.lib; {
     description = "Tool for analysing captured signals from sdr receivers";
     homepage = https://github.com/miek/inspectrum;

From 2e91b2d585afdb3b076b3ad655579774f100bad5 Mon Sep 17 00:00:00 2001
From: Tuomas Tynkkynen <tuomas@tuxera.com>
Date: Sat, 18 Mar 2017 21:04:07 +0200
Subject: [PATCH 03/41] default.nix: Provide correct instructions how to
 upgrade Nix

Supersedes #17631.
---
 default.nix | 12 +++++++++++-
 1 file changed, 11 insertions(+), 1 deletion(-)

diff --git a/default.nix b/default.nix
index 8171f4149d2f8..a4896a9bbeece 100644
--- a/default.nix
+++ b/default.nix
@@ -2,7 +2,17 @@ let requiredVersion = import ./lib/minver.nix; in
 
 if ! builtins ? nixVersion || builtins.compareVersions requiredVersion builtins.nixVersion == 1 then
 
-  abort "This version of Nixpkgs requires Nix >= ${requiredVersion}, please upgrade! See https://nixos.org/wiki/How_to_update_when_Nix_is_too_old_to_evaluate_Nixpkgs"
+  abort ''
+
+    This version of Nixpkgs requires Nix >= ${requiredVersion}, please upgrade:
+
+    - If you are running NixOS, use `nixos-rebuild' to upgrade your system.
+
+    - If you installed Nix using the install script (https://nixos.org/nix/install),
+      it is safe to upgrade by running it again:
+
+          curl https://nixos.org/nix/install | sh
+  ''
 
 else
 

From 63bd364cf9bf8ce24a2b0057e9b89b1b58e4b725 Mon Sep 17 00:00:00 2001
From: Shane Pearlman <shanemikel1@gmail.com>
Date: Sat, 18 Mar 2017 21:44:55 -0700
Subject: [PATCH 04/41] htmldoc: add darwin support
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

I also added a long description and updated the homepage to point to
the author’s new github.io site.
---
 lib/maintainers.nix                        |  1 +
 pkgs/applications/misc/htmldoc/default.nix | 16 -----------
 pkgs/tools/typesetting/htmldoc/default.nix | 32 ++++++++++++++++++++++
 pkgs/top-level/all-packages.nix            |  8 +++---
 4 files changed, 37 insertions(+), 20 deletions(-)
 delete mode 100644 pkgs/applications/misc/htmldoc/default.nix
 create mode 100644 pkgs/tools/typesetting/htmldoc/default.nix

diff --git a/lib/maintainers.nix b/lib/maintainers.nix
index e7b8ff7bf1015..3264d7fcba27a 100644
--- a/lib/maintainers.nix
+++ b/lib/maintainers.nix
@@ -453,6 +453,7 @@
   scolobb = "Sergiu Ivanov <sivanov@colimite.fr>";
   sepi = "Raffael Mancini <raffael@mancini.lu>";
   seppeljordan = "Sebastian Jordan <sebastian.jordan.mail@googlemail.com>";
+  shanemikel = "Shane Pearlman <shanemikel1@gmail.com>";
   sheenobu = "Sheena Artrip <sheena.artrip@gmail.com>";
   sheganinans = "Aistis Raulinaitis <sheganinans@gmail.com>";
   shell = "Shell Turner <cam.turn@gmail.com>";
diff --git a/pkgs/applications/misc/htmldoc/default.nix b/pkgs/applications/misc/htmldoc/default.nix
deleted file mode 100644
index e8274418ae169..0000000000000
--- a/pkgs/applications/misc/htmldoc/default.nix
+++ /dev/null
@@ -1,16 +0,0 @@
-{ stdenv, fetchurl, fltk, openssl, libpng, libjpeg }:
-stdenv.mkDerivation rec {
-  name = "htmldoc-1.8.27";
-  src = fetchurl {
-    url = http://ftp.easysw.com/pub/htmldoc/1.8.27/htmldoc-1.8.27-source.tar.bz2;
-    sha256 = "04wnxgx6fxdxwiy9vbawdibngwf55mi01hjrr5fkfs22fcix5zw9";
-  };
-  buildInputs = [ fltk openssl libpng libjpeg ];
-  meta = {
-    homepage = http://www.htmldoc.org/;
-    description = "Converts HTML files to indexed HTML, PS or PDF";
-    license = stdenv.lib.licenses.gpl2;
-    maintainers = with stdenv.lib.maintainers; [ viric ];
-    platforms = with stdenv.lib.platforms; linux;
-  };
-}
diff --git a/pkgs/tools/typesetting/htmldoc/default.nix b/pkgs/tools/typesetting/htmldoc/default.nix
new file mode 100644
index 0000000000000..74abb8e60c6ac
--- /dev/null
+++ b/pkgs/tools/typesetting/htmldoc/default.nix
@@ -0,0 +1,32 @@
+{ stdenv, fetchurl
+
+, SystemConfiguration ? null, Foundation ? null
+}:
+
+assert stdenv.isDarwin -> SystemConfiguration != null
+                       && Foundation != null;
+
+stdenv.mkDerivation {
+  name = "htmldoc-1.8.29";
+  src = fetchurl {
+    url = "https://github.com/michaelrsweet/htmldoc/releases/download"
+        + "/release-1.8.29/htmldoc-1.8.29-source.tar.gz";
+    md5 = "14d32bd772e2bc6af7b9b2233724c3ec";
+  };
+  buildInputs =
+    stdenv.lib.ifEnable stdenv.isDarwin [SystemConfiguration Foundation];
+
+  meta = with stdenv.lib; {
+    description = "Converts HTML files to PostScript and PDF";
+    homepage    = https://michaelrsweet.github.io/htmldoc;
+    license     = licenses.gpl2;
+    maintainers = with maintainers; [ viric shanemikel ];
+    platforms   = with platforms; linux ++ darwin;
+
+    longDescription = ''
+      HTMLDOC is a program that reads HTML source files or web pages and
+      generates corresponding HTML, PostScript, or PDF files with an optional
+      table of contents.
+    '';
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 9686b1c62d64f..1957b18cb8cbe 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -4356,6 +4356,10 @@ with pkgs;
 
   html-xml-utils = callPackage ../tools/text/xml/html-xml-utils { };
 
+  htmldoc = callPackage ../tools/typesetting/htmldoc {
+    inherit (darwin.apple_sdk.frameworks) SystemConfiguration Foundation;
+  };
+
   rcm = callPackage ../tools/misc/rcm {};
 
   tftp-hpa = callPackage ../tools/networking/tftp-hpa {};
@@ -13902,10 +13906,6 @@ with pkgs;
 
   ht = callPackage ../applications/editors/ht { };
 
-  htmldoc = callPackage ../applications/misc/htmldoc {
-    fltk = fltk13;
-  };
-
   hugin = callPackage ../applications/graphics/hugin { };
 
   hugo = callPackage ../applications/misc/hugo { };

From 1b10483b5e217fd1725b90009a45c05443cba737 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=B6rg=20Thalheim?= <joerg@thalheim.io>
Date: Sun, 19 Mar 2017 13:31:13 +0100
Subject: [PATCH 05/41] htmldoc: use sha256 instead of md5

---
 pkgs/tools/typesetting/htmldoc/default.nix | 9 +++++----
 1 file changed, 5 insertions(+), 4 deletions(-)

diff --git a/pkgs/tools/typesetting/htmldoc/default.nix b/pkgs/tools/typesetting/htmldoc/default.nix
index 74abb8e60c6ac..0cd1343dd4b52 100644
--- a/pkgs/tools/typesetting/htmldoc/default.nix
+++ b/pkgs/tools/typesetting/htmldoc/default.nix
@@ -6,12 +6,13 @@
 assert stdenv.isDarwin -> SystemConfiguration != null
                        && Foundation != null;
 
-stdenv.mkDerivation {
-  name = "htmldoc-1.8.29";
+stdenv.mkDerivation rec {
+  version = "1.8.29";
+  name = "htmldoc-${version}";
   src = fetchurl {
     url = "https://github.com/michaelrsweet/htmldoc/releases/download"
-        + "/release-1.8.29/htmldoc-1.8.29-source.tar.gz";
-    md5 = "14d32bd772e2bc6af7b9b2233724c3ec";
+      + "/release-${version}/htmldoc-${version}-source.tar.gz";
+    sha256 = "15x0xdf487j4i4gfap5yr83airxnbp2v4lxaz79a4s3iirrq39p0";
   };
   buildInputs =
     stdenv.lib.ifEnable stdenv.isDarwin [SystemConfiguration Foundation];

From c883cefc6fa60feba83615bb7d77090855e12733 Mon Sep 17 00:00:00 2001
From: Marti Serra <marti.serra.coscollano@gmail.com>
Date: Sat, 18 Mar 2017 19:51:25 +0100
Subject: [PATCH 06/41] pythonPackages.libnacl: init at 1.5.0

---
 lib/maintainers.nix                           |  1 +
 .../python-modules/libnacl/default.nix        | 26 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 3 files changed, 29 insertions(+)
 create mode 100644 pkgs/development/python-modules/libnacl/default.nix

diff --git a/lib/maintainers.nix b/lib/maintainers.nix
index e7b8ff7bf1015..88a051cb57f5c 100644
--- a/lib/maintainers.nix
+++ b/lib/maintainers.nix
@@ -538,6 +538,7 @@
   wscott = "Wayne Scott <wsc9tt@gmail.com>";
   wyvie = "Elijah Rum <elijahrum@gmail.com>";
   xnwdd = "Guillermo NWDD <nwdd+nixos@no.team>";
+  xvapx = "Marti Serra <marti.serra.coscollano@gmail.com>";
   xwvvvvwx = "David Terry <davidterry@posteo.de>";
   yarr = "Dmitry V. <savraz@gmail.com>";
   yochai = "Yochai <yochai@titat.info>";
diff --git a/pkgs/development/python-modules/libnacl/default.nix b/pkgs/development/python-modules/libnacl/default.nix
new file mode 100644
index 0000000000000..09d834c856870
--- /dev/null
+++ b/pkgs/development/python-modules/libnacl/default.nix
@@ -0,0 +1,26 @@
+{ stdenv, buildPythonPackage, fetchPypi, pkgs }:
+
+buildPythonPackage rec {
+  pname = "libnacl";
+  version = "1.5.0";
+  name = "${pname}-${version}";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "1ph042x0cfysj16mmjif40pxn505rg5c9n94s972dgc0mfgvrwhs";
+  };
+
+  propagatedBuildInputs = [ pkgs.libsodium ];
+
+  postPatch = ''
+    substituteInPlace "./libnacl/__init__.py" --replace "ctypes.cdll.LoadLibrary('libsodium.so')" "ctypes.cdll.LoadLibrary('${pkgs.libsodium}/lib/libsodium.so')"
+  '';
+
+  meta = {
+    maintainers = with stdenv.lib.maintainers; [ xvapx ];
+    description = "Python bindings for libsodium based on ctypes";
+    homepage = "https://pypi.python.org/pypi/libnacl";
+    license = stdenv.lib.licenses.asl20;
+    platforms = stdenv.lib.platforms.linux;
+  };
+}
\ No newline at end of file
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 9a3debdf48b7e..a8edf1e7616ca 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -13867,6 +13867,8 @@ in {
     clblas = pkgs.clblas-cuda;
   };
 
+  libnacl = callPackage ../development/python-modules/libnacl/default.nix { };
+
   libplist = if isPy3k then throw "libplist not supported for interpreter ${python.executable}" else
     (pkgs.libplist.override{python2Packages=self; }).py;
 

From 09a94458d3207093e819d4f2d243ebc9e188203a Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=B6rg=20Thalheim?= <joerg@thalheim.io>
Date: Sun, 19 Mar 2017 20:47:25 +0100
Subject: [PATCH 07/41] bevelbar: remove unnessary makeFlags

---
 pkgs/applications/window-managers/bevelbar/default.nix | 1 -
 1 file changed, 1 deletion(-)

diff --git a/pkgs/applications/window-managers/bevelbar/default.nix b/pkgs/applications/window-managers/bevelbar/default.nix
index b7bc762848808..582f9cb61f8e0 100644
--- a/pkgs/applications/window-managers/bevelbar/default.nix
+++ b/pkgs/applications/window-managers/bevelbar/default.nix
@@ -13,7 +13,6 @@ stdenv.mkDerivation rec {
 
   buildInputs = [ libX11 libXrandr libXft ];
 
-  makeFlags = [ "prefix=$(out)" ];
   installFlags = [ "prefix=$(out)" ];
 
   meta = with stdenv.lib; {

From 597865725f89c56b5a7b4fb5eaa006174e82366d Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=B6rg=20Thalheim?= <joerg@thalheim.io>
Date: Sun, 19 Mar 2017 20:58:41 +0100
Subject: [PATCH 08/41] pythonPackages.libnacl: enable tests

---
 .../python-modules/libnacl/default.nix        | 21 ++++++++++++-------
 pkgs/top-level/python-packages.nix            |  4 +++-
 2 files changed, 16 insertions(+), 9 deletions(-)

diff --git a/pkgs/development/python-modules/libnacl/default.nix b/pkgs/development/python-modules/libnacl/default.nix
index 09d834c856870..0aa3ed29f20b1 100644
--- a/pkgs/development/python-modules/libnacl/default.nix
+++ b/pkgs/development/python-modules/libnacl/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, buildPythonPackage, fetchPypi, pkgs }:
+{ stdenv, buildPythonPackage, fetchPypi, pytest, libsodium }:
 
 buildPythonPackage rec {
   pname = "libnacl";
@@ -10,17 +10,22 @@ buildPythonPackage rec {
     sha256 = "1ph042x0cfysj16mmjif40pxn505rg5c9n94s972dgc0mfgvrwhs";
   };
 
-  propagatedBuildInputs = [ pkgs.libsodium ];
+  buildInputs = [ pytest ];
+  propagatedBuildInputs = [ libsodium ];
 
   postPatch = ''
-    substituteInPlace "./libnacl/__init__.py" --replace "ctypes.cdll.LoadLibrary('libsodium.so')" "ctypes.cdll.LoadLibrary('${pkgs.libsodium}/lib/libsodium.so')"
+    substituteInPlace "./libnacl/__init__.py" --replace "ctypes.cdll.LoadLibrary('libsodium.so')" "ctypes.cdll.LoadLibrary('${libsodium}/lib/libsodium.so')"
   '';
 
-  meta = {
-    maintainers = with stdenv.lib.maintainers; [ xvapx ];
+  checkPhase = ''
+    py.test
+  '';
+
+  meta = with stdenv.lib; {
+    maintainers = with maintainers; [ xvapx ];
     description = "Python bindings for libsodium based on ctypes";
     homepage = "https://pypi.python.org/pypi/libnacl";
-    license = stdenv.lib.licenses.asl20;
-    platforms = stdenv.lib.platforms.linux;
+    license = licenses.asl20;
+    platforms = platforms.linux;
   };
-}
\ No newline at end of file
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index a8edf1e7616ca..f59191e6be53d 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -13867,7 +13867,9 @@ in {
     clblas = pkgs.clblas-cuda;
   };
 
-  libnacl = callPackage ../development/python-modules/libnacl/default.nix { };
+  libnacl = callPackage ../development/python-modules/libnacl/default.nix {
+    inherit (pkgs) libsodium;
+  };
 
   libplist = if isPy3k then throw "libplist not supported for interpreter ${python.executable}" else
     (pkgs.libplist.override{python2Packages=self; }).py;

From 82e760a3d613ec9e82ab48131f8b94b1119dc535 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=B6rg=20Thalheim?= <joerg@thalheim.io>
Date: Sun, 19 Mar 2017 21:04:43 +0100
Subject: [PATCH 09/41] armadillo: fix evaluation error

cc: @ndowens08
---
 pkgs/development/libraries/armadillo/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/armadillo/default.nix b/pkgs/development/libraries/armadillo/default.nix
index bea592a6d20dc..d5a601f09ba00 100644
--- a/pkgs/development/libraries/armadillo/default.nix
+++ b/pkgs/development/libraries/armadillo/default.nix
@@ -15,11 +15,11 @@ stdenv.mkDerivation rec {
   cmakeFlags = [ "-DDETECT_HDF5=ON" ];
 
  patches = [ ./use-unix-config-on-OS-X.patch ];
-  
+
   meta = with stdenv.lib; {
     description = "C++ linear algebra library";
     homepage = http://arma.sourceforge.net;
-    license = licenses.apl2;
+    license = licenses.asl20;
     platforms = platforms.unix;
     maintainers = with maintainers; [ juliendehos knedlsepp ];
   };

From 6ea3eefdfc9313c850304d01a398c6199805b726 Mon Sep 17 00:00:00 2001
From: Dan Peebles <pumpkin@me.com>
Date: Sun, 19 Mar 2017 16:21:18 -0400
Subject: [PATCH 10/41] gcc5: fix for libc++ 3.8 and above

This is in preparation for the big Darwin LLVM 4.0 stdenv switchover
---
 pkgs/development/compilers/gcc/5/default.nix  |  5 +-
 .../compilers/gcc/5/libcxx38-and-above.patch  | 46 +++++++++++++++++++
 2 files changed, 50 insertions(+), 1 deletion(-)
 create mode 100644 pkgs/development/compilers/gcc/5/libcxx38-and-above.patch

diff --git a/pkgs/development/compilers/gcc/5/default.nix b/pkgs/development/compilers/gcc/5/default.nix
index 1721eba325bf4..da4f7a6067050 100644
--- a/pkgs/development/compilers/gcc/5/default.nix
+++ b/pkgs/development/compilers/gcc/5/default.nix
@@ -74,7 +74,10 @@ let version = "5.4.0";
       # The GNAT Makefiles did not pay attention to CFLAGS_FOR_TARGET for its
       # target libraries and tools.
       ++ optional langAda ../gnat-cflags.patch
-      ++ optional langFortran ../gfortran-driving.patch;
+      ++ optional langFortran ../gfortran-driving.patch
+
+      # This could be applied unconditionally but I don't want to cause a full Linux rebuild.
+      ++ optional stdenv.cc.isClang ./libcxx38-and-above.patch;
 
     javaEcj = fetchurl {
       # The `$(top_srcdir)/ecj.jar' file is automatically picked up at
diff --git a/pkgs/development/compilers/gcc/5/libcxx38-and-above.patch b/pkgs/development/compilers/gcc/5/libcxx38-and-above.patch
new file mode 100644
index 0000000000000..ee48901a6d0ca
--- /dev/null
+++ b/pkgs/development/compilers/gcc/5/libcxx38-and-above.patch
@@ -0,0 +1,46 @@
+This is a slightly modified version of https://svnweb.freebsd.org/ports/head/lang/gcc5/files/patch-libc%2B%2B?revision=432958&view=co&pathrev=432958,
+which doesn't apply cleanly due to them using a slightly different format of patch from us. I just replaced the .orig file references with a/b paths.
+
+--- a/gcc/auto-profile.c 2015-01-18 02:25:42 UTC
++++ b/gcc/auto-profile.c
+@@ -19,11 +19,9 @@ along with GCC; see the file COPYING3.  
+ <http://www.gnu.org/licenses/>.  */
+ 
+ #include "config.h"
+-#include "system.h"
+-
+-#include <string.h>
+ #include <map>
+ #include <set>
++#include "system.h"
+ 
+ #include "coretypes.h"
+ #include "hash-set.h"
+--- a/gcc/graphite-isl-ast-to-gimple.c 2017-01-19 21:02:12 UTC
++++ b/gcc/graphite-isl-ast-to-gimple.c
+@@ -38,6 +38,7 @@ extern "C" {
+ #endif
+ #endif
+ 
++#include <map>
+ #include "system.h"
+ #include "coretypes.h"
+ #include "hash-set.h"
+@@ -75,7 +76,6 @@ extern "C" {
+ #include "tree-scalar-evolution.h"
+ #include "gimple-ssa.h"
+ #include "tree-into-ssa.h"
+-#include <map>
+ 
+ #ifdef HAVE_isl
+ #include "graphite-poly.h"
+--- a/gcc/system.h 2015-01-05 12:33:28 UTC
++++ b/gcc/system.h
+@@ -217,6 +217,7 @@ extern int errno;
+ #ifdef __cplusplus
+ # include <algorithm>
+ # include <cstring>
++# include <new>
+ # include <utility>
+ #endif
+ 

From 93ec1ad987e0d5130509c06e4eb2b3e9b7b5cb5f Mon Sep 17 00:00:00 2001
From: ndowens <ndowens04@gmail.com>
Date: Sun, 19 Mar 2017 15:22:57 -0500
Subject: [PATCH 11/41] highlight: 3.28 -> 3.35 (#24068)

* highlight: 3.28 -> 3.35

highlight: Add support for darwin, suspecting needs gcc

highlight: Fixed isDarwin [gcc]

* highlight: enable darwin build
---
 pkgs/tools/text/highlight/default.nix | 19 ++++++++++++++-----
 pkgs/top-level/all-packages.nix       |  7 +++++--
 2 files changed, 19 insertions(+), 7 deletions(-)

diff --git a/pkgs/tools/text/highlight/default.nix b/pkgs/tools/text/highlight/default.nix
index 6f2a2df82f8dc..666dae1db9b8a 100644
--- a/pkgs/tools/text/highlight/default.nix
+++ b/pkgs/tools/text/highlight/default.nix
@@ -1,4 +1,6 @@
-{ stdenv, fetchurl, getopt, lua, boost, pkgconfig }:
+{ stdenv, fetchurl, getopt, lua, boost, pkgconfig, gcc }:
+
+with stdenv.lib;
 
 stdenv.mkDerivation rec {
   name = "highlight-${version}";
@@ -9,16 +11,23 @@ stdenv.mkDerivation rec {
     sha256 = "8a14b49f5e0c07daa9f40b4ce674baa00bb20061079473a5d386656f6d236d05";
   };
 
-  nativeBuildInputs = [ pkgconfig ];
+  nativeBuildInputs = [ pkgconfig ] ++ optional stdenv.isDarwin  gcc ;
 
   buildInputs = [ getopt lua boost ];
 
-  preConfigure = ''makeFlags="PREFIX=$out conf_dir=$out/etc/highlight/"'';
+  prePatch = stdenv.lib.optionalString stdenv.cc.isClang ''
+    substituteInPlace src/makefile \
+        --replace 'CXX=g++' 'CXX=clang++'
+  '';
+
+  preConfigure = ''
+    makeFlags="PREFIX=$out conf_dir=$out/etc/highlight/"
+  '';
 
   meta = with stdenv.lib; {
     description = "Source code highlighting tool";
     homepage = "http://www.andre-simon.de/doku/highlight/en/highlight.php";
-    platforms = platforms.linux;
-    maintainers = maintainers.ndowens;
+    platforms = platforms.unix;
+    maintainers = [ maintainers.ndowens ];
   };
 }
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 11ccfd1a30ab5..a2e5fe27b14af 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -2255,9 +2255,12 @@ with pkgs;
 
   hfsprogs = callPackage ../tools/filesystems/hfsprogs { };
 
-  highlight = callPackage ../tools/text/highlight {
+  highlight = callPackage ../tools/text/highlight ({
     lua = lua5;
-  };
+  } // lib.optionalAttrs stdenv.isDarwin {
+    # doesn't build with clang_37
+    inherit (llvmPackages_38) stdenv;
+  });
 
   homesick = callPackage ../tools/misc/homesick { };
 

From d80a7210bb8ec1344796cce057e420ed46fb5e77 Mon Sep 17 00:00:00 2001
From: Dan Peebles <pumpkin@me.com>
Date: Sun, 19 Mar 2017 16:33:52 -0400
Subject: [PATCH 12/41] nasm: 2.11.08 -> 2.12.02

Upgrading primarily because it works with newer LLVM (for the big Darwin
stdenv LLVM bump) but a newer version probably helps for other reasons :)
---
 pkgs/development/compilers/nasm/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/compilers/nasm/default.nix b/pkgs/development/compilers/nasm/default.nix
index a30a97ce9ce5a..eb090e8b38ad6 100644
--- a/pkgs/development/compilers/nasm/default.nix
+++ b/pkgs/development/compilers/nasm/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "nasm-${version}";
-  version = "2.11.08";
+  version = "2.12.02";
 
   src = fetchurl {
     url = "http://www.nasm.us/pub/nasm/releasebuilds/${version}/${name}.tar.bz2";
-    sha256 = "0ialkla6i63j8fpv840jy7k5mdf2wbqr98bvbcq0dp0b38ls18wx";
+    sha256 = "097318bjxvmffbjfd1k89parc04xf5jfxg2rr93581lccwf8kc00";
   };
 
   meta = with stdenv.lib; {

From 876dead5b6c3732642d3c70e2d071f2923372d0e Mon Sep 17 00:00:00 2001
From: ndowens <ndowens04@gmail.com>
Date: Sun, 19 Mar 2017 15:41:35 -0500
Subject: [PATCH 13/41] joe: 4.2 -> 4.4

---
 pkgs/applications/editors/joe/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/editors/joe/default.nix b/pkgs/applications/editors/joe/default.nix
index 323059417ea8c..d6c87c4991b95 100644
--- a/pkgs/applications/editors/joe/default.nix
+++ b/pkgs/applications/editors/joe/default.nix
@@ -1,12 +1,12 @@
 { stdenv, fetchurl } :
 
 stdenv.mkDerivation rec {
-  version = "4.2";
+  version = "4.4";
   name = "joe-${version}";
 
   src = fetchurl {
     url = "mirror://sourceforge/joe-editor/${name}.tar.gz";
-    sha256 = "0x39x0qrwdbhl45wd8r8cpzigsip6m5j2crajsrbffk8qm5scpdw";
+    sha256 = "0y898r1xlrv75m00y598rvwwsricabplyh80wawsqafapcl4hw55";
   };
 
   meta = with stdenv.lib; {

From fa9400f16f9737ebb6cd1aec3a534a645db23fc7 Mon Sep 17 00:00:00 2001
From: Shane Pearlman <shanemikel1@gmail.com>
Date: Sun, 19 Mar 2017 14:21:29 -0700
Subject: [PATCH 14/41] htmldoc: use stdenv.lib.optional instead of
 stdenv.lib.enable

---
 pkgs/tools/typesetting/htmldoc/default.nix | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/typesetting/htmldoc/default.nix b/pkgs/tools/typesetting/htmldoc/default.nix
index 0cd1343dd4b52..b9d5407c68de3 100644
--- a/pkgs/tools/typesetting/htmldoc/default.nix
+++ b/pkgs/tools/typesetting/htmldoc/default.nix
@@ -14,8 +14,9 @@ stdenv.mkDerivation rec {
       + "/release-${version}/htmldoc-${version}-source.tar.gz";
     sha256 = "15x0xdf487j4i4gfap5yr83airxnbp2v4lxaz79a4s3iirrq39p0";
   };
-  buildInputs =
-    stdenv.lib.ifEnable stdenv.isDarwin [SystemConfiguration Foundation];
+  buildInputs = with stdenv;
+       lib.optional isDarwin SystemConfiguration
+    ++ lib.optional isDarwin Foundation;
 
   meta = with stdenv.lib; {
     description = "Converts HTML files to PostScript and PDF";

From b00bfb0401347637e512ef56acb4e34c266209b8 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Guillaume=20Mass=C3=A9?= <masgui@gmail.com>
Date: Sun, 19 Mar 2017 17:15:21 -0400
Subject: [PATCH 15/41] cre2: init at 0.3.0

c wrapper for google's re2 regex library
---
 pkgs/development/libraries/cre2/default.nix | 39 +++++++++++++++++++++
 pkgs/top-level/all-packages.nix             |  2 ++
 2 files changed, 41 insertions(+)
 create mode 100644 pkgs/development/libraries/cre2/default.nix

diff --git a/pkgs/development/libraries/cre2/default.nix b/pkgs/development/libraries/cre2/default.nix
new file mode 100644
index 0000000000000..c1fe4686ce237
--- /dev/null
+++ b/pkgs/development/libraries/cre2/default.nix
@@ -0,0 +1,39 @@
+{ stdenv, fetchFromGitHub, autoconf, automake,
+  libtool, pkgconfig, re2, texinfo }:
+
+stdenv.mkDerivation rec {
+  name = "cre2-${version}";
+
+  version = "0.3.0";
+    
+  src = fetchFromGitHub {
+    owner = "marcomaggi";
+    repo = "cre2";
+    rev = version;
+    sha256 = "12yrdad87jjqrhbqm02hzsayan2402vf61a9x1b2iabv6d1c1bnj";
+  };
+
+  nativeBuildInputs = [
+    autoconf
+    automake
+    libtool
+    pkgconfig
+    re2
+    texinfo
+  ];
+
+  NIX_LDFLAGS="-lre2 -lpthread";
+
+  preConfigure = "sh autogen.sh";
+  
+  configureFlags = [
+    "--enable-maintainer-mode"
+  ];
+
+  meta = {
+    homepage = http://marcomaggi.github.io/docs/cre2.html;
+    description = "C Wrapper for RE2";
+    license = stdenv.lib.licenses.bsd3;
+    platforms = with stdenv.lib.platforms; all;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index a2e5fe27b14af..85df2db268265 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -7195,6 +7195,8 @@ with pkgs;
 
   cracklib = callPackage ../development/libraries/cracklib { };
 
+  cre2 = callPackage ../development/libraries/cre2 { };
+
   cryptopp = callPackage ../development/libraries/crypto++ { };
 
   curlcpp = callPackage ../development/libraries/curlcpp { };

From d6114f6c6bd74c68829a4a586464b9a1633c76ac Mon Sep 17 00:00:00 2001
From: ndowens <ndowens04@gmail.com>
Date: Sun, 19 Mar 2017 16:07:12 -0500
Subject: [PATCH 16/41] mg: 20110905 -> 20161005; Remove un-needed configure
 patch

mg: 20110905 -> 20161005
---
 pkgs/applications/editors/mg/configure.patch | 35 --------------------
 pkgs/applications/editors/mg/default.nix     | 29 ++++++++--------
 2 files changed, 15 insertions(+), 49 deletions(-)
 delete mode 100644 pkgs/applications/editors/mg/configure.patch

diff --git a/pkgs/applications/editors/mg/configure.patch b/pkgs/applications/editors/mg/configure.patch
deleted file mode 100644
index 11105299eb4b8..0000000000000
--- a/pkgs/applications/editors/mg/configure.patch
+++ /dev/null
@@ -1,35 +0,0 @@
---- configure.old	2013-07-30 19:42:51.000000000 +0200
-+++ configure	2013-07-30 19:47:26.000000000 +0200
-@@ -163,31 +163,7 @@
-     echo 'Fails.'
- fi
- 
--
--if [ ! -r /usr/include/term.h ]; then
--    note 'term.h'
--    if [ -r /usr/include/ncurses/term.h ]; then
--	echo "Found in /usr/include/ncurses"
--	extraflags="$extraflags -I/usr/include/ncurses"
--    else
--	for i in pkg local; do
--	    if [ -r /usr/$i/include/term.h ]; then
--		echo "Found in /usr/$i/include"
--		extralibs="$extralibs -L/usr/$i/lib"
--		extraflags="$extraflags -I/usr/$i/include"
--		break
--	    else
--		false
--	    fi
--	done ||
--	{
--	    echo 'Not found!' >&2
--	    echo 'Do you have the ncurses devel package installed?' >&2
--	    echo 'If you know where term.h is, please email the author!' >&2
--	    exit 1
--	}
--    fi
--fi
-+extraflags="$extraflags $NIX_CFLAGS_COMPILE"
- 
- note 'base and dirname'
- if gcc_defines "__GLIBC__" || gcc_defines "__CYGWIN__" ; then
diff --git a/pkgs/applications/editors/mg/default.nix b/pkgs/applications/editors/mg/default.nix
index 95a6205125b01..b8bfd40c079ba 100644
--- a/pkgs/applications/editors/mg/default.nix
+++ b/pkgs/applications/editors/mg/default.nix
@@ -1,19 +1,19 @@
-{ fetchurl, stdenv, ncurses }:
+{ fetchurl, stdenv, ncurses, pkgconfig, libbsd }:
 stdenv.mkDerivation rec {
-  name = "mg-20110905";
+  name = "mg-${version}";
+  version = "20161005";
 
   src = fetchurl {
-    url = http://homepage.boetes.org/software/mg/mg-20110905.tar.gz;
-    sha256 = "0ac2c7wy5kkcflm7cmiqm5xhb5c4yfw3i33iln8civ1yd9z7vlqw";
+    url = "http://homepage.boetes.org/software/mg/${name}.tar.gz";
+    sha256 = "0qaydk2cy765n9clghmi5gdnpwn15y2v0fj6r0jcm0v7d89vbz5p";
   };
 
-  dontAddPrefix = true;
-
-  patches = [ ./configure.patch ];
-  patchFlags = "-p0";
-
   NIX_CFLAGS_COMPILE = "-Wno-error";
-  buildFlags = [ "CC=cc" ];
+  
+  preConfigure = ''
+    substituteInPlace GNUmakefile \
+      --replace /usr/bin/pkg-config ${pkgconfig}/bin/pkg-config
+      '';
 
   installPhase = ''
     mkdir -p $out/bin
@@ -22,12 +22,13 @@ stdenv.mkDerivation rec {
     cp mg.1 $out/share/man/man1
   '';
 
-  buildInputs = [ ncurses ];
+  nativeBuildInputs = [ pkgconfig ];
+  buildInputs = [ ncurses libbsd ];
 
-  meta = {
+  meta = with stdenv.lib; {
     homepage = http://homepage.boetes.org/software/mg/;
     description = "Micro GNU/emacs, a portable version of the mg maintained by the OpenBSD team";
-    license = stdenv.lib.licenses.publicDomain;
-    platforms = stdenv.lib.platforms.all;
+    license = licenses.publicDomain;
+    platforms = platforms.all;
   };
 }

From 685ac5287b7e76fe08bd39dc257706757a93efdf Mon Sep 17 00:00:00 2001
From: ndowens <ndowens04@gmail.com>
Date: Sun, 19 Mar 2017 16:36:48 -0500
Subject: [PATCH 17/41] nano: 2.7.3 -> 2.7.5

---
 pkgs/applications/editors/nano/default.nix | 11 ++++++++---
 1 file changed, 8 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/editors/nano/default.nix b/pkgs/applications/editors/nano/default.nix
index 9814e697d22b8..b1f581dc8417b 100644
--- a/pkgs/applications/editors/nano/default.nix
+++ b/pkgs/applications/editors/nano/default.nix
@@ -17,23 +17,28 @@ let
     rev = "17e0de65e1cbba3d6baa82deaefa853b41f5c161";
     sha256 = "1g51h65i31andfs2fbp1v3vih9405iknqn11fzywjxji00kjqv5s";
   };
+
 in stdenv.mkDerivation rec {
   name = "nano-${version}";
-  version = "2.7.3";
+  version = "2.7.5";
+  
   src = fetchurl {
     url = "mirror://gnu/nano/${name}.tar.xz";
-    sha256 = "1z0bfyc5cvv83l3bjmlcwl49mpxrp65k5ffsfpnayfyjc18fy9nr";
+    sha256 = "1r37gqx7hppqbgsbclchiis8wzzpb9srm3q3dlvlii2gpkk28kd6";
   };
+
   nativeBuildInputs = [ texinfo ] ++ optional enableNls gettext;
   buildInputs = [ ncurses ];
+  
   outputs = [ "out" "info" ];
+  
   configureFlags = ''
     --sysconfdir=/etc
     ${optionalString (!enableNls) "--disable-nls"}
     ${optionalString enableTiny "--enable-tiny"}
   '';
 
-  postPatch = stdenv.lib.optionalString stdenv.isDarwin ''
+  postPatch = optionalString stdenv.isDarwin ''
     substituteInPlace src/text.c --replace "__time_t" "time_t"
   '';
 

From 3ac089757a76008f75b563a0014bd94a9afbe6d4 Mon Sep 17 00:00:00 2001
From: ndowens <ndowens04@gmail.com>
Date: Sun, 19 Mar 2017 16:50:06 -0500
Subject: [PATCH 18/41] Cosmetic change; Replaced automake autoconf

---
 pkgs/development/libraries/cre2/default.nix | 17 ++++++-----------
 1 file changed, 6 insertions(+), 11 deletions(-)

diff --git a/pkgs/development/libraries/cre2/default.nix b/pkgs/development/libraries/cre2/default.nix
index c1fe4686ce237..74619cbaaaede 100644
--- a/pkgs/development/libraries/cre2/default.nix
+++ b/pkgs/development/libraries/cre2/default.nix
@@ -1,9 +1,8 @@
-{ stdenv, fetchFromGitHub, autoconf, automake,
+{ stdenv, fetchFromGitHub, autoreconfHook,
   libtool, pkgconfig, re2, texinfo }:
 
 stdenv.mkDerivation rec {
   name = "cre2-${version}";
-
   version = "0.3.0";
     
   src = fetchFromGitHub {
@@ -14,26 +13,22 @@ stdenv.mkDerivation rec {
   };
 
   nativeBuildInputs = [
-    autoconf
-    automake
+    autoreconfHook
     libtool
     pkgconfig
-    re2
-    texinfo
   ];
+  buildInputs = [ re2 texinfo ];
 
   NIX_LDFLAGS="-lre2 -lpthread";
 
-  preConfigure = "sh autogen.sh";
-  
   configureFlags = [
     "--enable-maintainer-mode"
   ];
 
-  meta = {
+  meta = with stdenv.lib; {
     homepage = http://marcomaggi.github.io/docs/cre2.html;
     description = "C Wrapper for RE2";
-    license = stdenv.lib.licenses.bsd3;
-    platforms = with stdenv.lib.platforms; all;
+    license = licenses.bsd3;
+    platforms = platforms.all;
   };
 }

From 5d849c72f162cf5282d3c966889a5b7cc26fcff3 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Sun, 19 Mar 2017 16:40:27 -0500
Subject: [PATCH 19/41] neo4j: 3.1.1 -> 3.1.2

---
 pkgs/servers/nosql/neo4j/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/nosql/neo4j/default.nix b/pkgs/servers/nosql/neo4j/default.nix
index f6fcca16081bc..a2158c9b54106 100644
--- a/pkgs/servers/nosql/neo4j/default.nix
+++ b/pkgs/servers/nosql/neo4j/default.nix
@@ -4,11 +4,11 @@ with stdenv.lib;
 
 stdenv.mkDerivation rec {
   name = "neo4j-${version}";
-  version = "3.1.1";
+  version = "3.1.2";
 
   src = fetchurl {
     url = "http://dist.neo4j.org/neo4j-community-${version}-unix.tar.gz";
-    sha256 = "1jz257brrrblxq0jdh79mmqand6lwi632y8sy5j6dxl3ssd3hrkx";
+    sha256 = "0kvbsm9mjwqyl3q2myif28a0f11i4rfq3hik07w9cdnrwyd75s40";
   };
 
   buildInputs = [ makeWrapper jre8 which gawk ];

From 515fc22263b22952e11632ff44c673dee25f48e1 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Sun, 19 Mar 2017 16:40:41 -0500
Subject: [PATCH 20/41] neo4j service: fix package installed into env to match
 running service

---
 nixos/modules/services/databases/neo4j.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/nixos/modules/services/databases/neo4j.nix b/nixos/modules/services/databases/neo4j.nix
index 205c8dc610ac4..7fba61fff5946 100644
--- a/nixos/modules/services/databases/neo4j.nix
+++ b/nixos/modules/services/databases/neo4j.nix
@@ -140,7 +140,7 @@ in {
       '';
     };
 
-    environment.systemPackages = [ pkgs.neo4j ];
+    environment.systemPackages = [ cfg.package ];
 
     users.extraUsers = singleton {
       name = "neo4j";

From cb73cb9e6216a09d5d071e42cd3e0248efe905bd Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Sun, 19 Mar 2017 16:41:55 -0500
Subject: [PATCH 21/41] neo4j service: neo4j-wrapper is deprecated, merge into
 neo4j.conf

---
 nixos/modules/services/databases/neo4j.nix | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/nixos/modules/services/databases/neo4j.nix b/nixos/modules/services/databases/neo4j.nix
index 7fba61fff5946..424e08a6ee346 100644
--- a/nixos/modules/services/databases/neo4j.nix
+++ b/nixos/modules/services/databases/neo4j.nix
@@ -27,9 +27,7 @@ let
     ''}
     dbms.shell.enabled=true
     ${cfg.extraServerConfig}
-  '';
 
-  wrapperConfig = pkgs.writeText "neo4j-wrapper.conf" ''
     # Default JVM parameters from neo4j.conf
     dbms.jvm.additional=-XX:+UseG1GC
     dbms.jvm.additional=-XX:-OmitStackTraceInFastThrow
@@ -135,7 +133,6 @@ in {
       preStart = ''
         mkdir -m 0700 -p ${cfg.dataDir}/{data/graph.db,conf,logs}
         ln -fs ${serverConfig} ${cfg.dataDir}/conf/neo4j.conf
-        ln -fs ${wrapperConfig} ${cfg.dataDir}/conf/neo4j-wrapper.conf
         if [ "$(id -u)" = 0 ]; then chown -R neo4j ${cfg.dataDir}; fi
       '';
     };

From 8ab037e0b5aec850db9025478f78f318e4979b60 Mon Sep 17 00:00:00 2001
From: ndowens <ndowens04@gmail.com>
Date: Sun, 19 Mar 2017 17:18:26 -0500
Subject: [PATCH 22/41] nedit: 5.6a -> 5.7

---
 pkgs/applications/editors/nedit/default.nix | 10 ++++++----
 1 file changed, 6 insertions(+), 4 deletions(-)

diff --git a/pkgs/applications/editors/nedit/default.nix b/pkgs/applications/editors/nedit/default.nix
index d933a207cd4a0..a15b557f0e574 100644
--- a/pkgs/applications/editors/nedit/default.nix
+++ b/pkgs/applications/editors/nedit/default.nix
@@ -1,16 +1,18 @@
 { stdenv, fetchurl, xlibsWrapper, motif, libXpm }:
 
 stdenv.mkDerivation rec {
-  name = "nedit-5.6a";
+  name = "nedit-${version}";
+  version = "5.7";
   
   src = fetchurl {
     url = "mirror://sourceforge/nedit/nedit-source/${name}-src.tar.gz";
-    sha256 = "1v8y8vwj3kn91crsddqkz843y6csgw7wkjnd3zdcb4bcrf1pjrsk";
+    sha256 = "0ym1zhjx9976rf2z5nr7dj4mjkxcicimhs686snjhdcpzxwsrndd";
   };
 
   hardeningDisable = [ "format" ];
 
-  buildInputs = [ xlibsWrapper motif libXpm ];
+  nativeBuildInputs = [ xlibsWrapper ];
+  buildInputs = [ motif libXpm ];
 
   buildFlags = if stdenv.isLinux then "linux" else
                # the linux config works fine on darwin too!
@@ -24,7 +26,7 @@ stdenv.mkDerivation rec {
   '';
 
   meta = with stdenv.lib; {
-    homepage = http://www.nedit.org;
+    homepage = http://sourceforge.net/projects/nedit;
     platforms = with platforms; linux ++ darwin;
   };
 }

From e27a85709d97671747aff55a455ae0b720bed7d6 Mon Sep 17 00:00:00 2001
From: ndowens <ndowens04@gmail.com>
Date: Sun, 19 Mar 2017 17:28:35 -0500
Subject: [PATCH 23/41] scite: 3.3.7 -> 3.7.3; Cosmetic changes

---
 pkgs/applications/editors/scite/default.nix | 22 ++++++++++-----------
 1 file changed, 10 insertions(+), 12 deletions(-)

diff --git a/pkgs/applications/editors/scite/default.nix b/pkgs/applications/editors/scite/default.nix
index 989d3e42a6faa..d02a08a0a5977 100644
--- a/pkgs/applications/editors/scite/default.nix
+++ b/pkgs/applications/editors/scite/default.nix
@@ -1,18 +1,16 @@
 { stdenv, fetchurl, pkgconfig, gtk2 }:
 
-let
-  version = "3.3.7";
-
-  version_short = stdenv.lib.replaceChars [ "." ] [ "" ] "${version}";
-in stdenv.mkDerivation {
+stdenv.mkDerivation rec {
   name = "scite-${version}";
+  version = "3.7.3";
 
   src = fetchurl {
-    url = "mirror://sourceforge/project/scintilla/SciTE/${version}/scite${version_short}.tgz";
-    sha256 = "0x7i6yxq50frsjkrp3lc5zy0d1ssq2n91igjn0dmqajpg7kls2dd";
+    url = "mirror://sourceforge/project/scintilla/SciTE/${version}/scite373.tgz";
+    sha256 = "05d81h1fqhjlw9apvrni3x2q4a562cd5ra1071qpna8h4ml0an9m";
   };
 
-  buildInputs = [ pkgconfig gtk2 ];
+  nativeBuildInputs = [ pkgconfig ];
+  buildInputs = [ gtk2 ];
   sourceRoot = "scintilla/gtk";
 
   buildPhase = ''
@@ -25,11 +23,11 @@ in stdenv.mkDerivation {
     make install prefix=$out/
   '';
 
-  meta = {
+  meta = with stdenv.lib; {
     homepage = "http://www.scintilla.org/SciTE.html";
     description = "SCIntilla based Text Editor";
-    license = stdenv.lib.licenses.mit;
-    platforms = stdenv.lib.platforms.linux;
-    maintainers = [ stdenv.lib.maintainers.rszibele ];
+    license = licenses.mit;
+    platforms = platforms.linux;
+    maintainers = [ maintainers.rszibele ];
   };
 }

From d9f46aa58a3e40ab36cde54fd57dfddec15e6006 Mon Sep 17 00:00:00 2001
From: Shane Pearlman <shanemikel1@gmail.com>
Date: Wed, 25 Jan 2017 15:49:08 -0800
Subject: [PATCH 24/41] nix-diff.sh maintainer script: "diffs" Nix environment
 generations

This script was inspired by Guix.  Read the source for documentation, or
invoke it with `nix-diff.sh -h` for a usage summary.
---
 maintainers/scripts/nix-diff.sh | 277 ++++++++++++++++++++++++++++++++
 1 file changed, 277 insertions(+)
 create mode 100755 maintainers/scripts/nix-diff.sh

diff --git a/maintainers/scripts/nix-diff.sh b/maintainers/scripts/nix-diff.sh
new file mode 100755
index 0000000000000..9e85b116bc921
--- /dev/null
+++ b/maintainers/scripts/nix-diff.sh
@@ -0,0 +1,277 @@
+#!/usr/bin/env nix-shell
+#! nix-shell -i bash -p coreutils gnugrep gnused
+
+################################################################################
+# nix-diff.sh                                                                  #
+################################################################################
+# This script "diffs" Nix profile generations.                                 #
+#                                                                              #
+# Example:                                                                     #
+################################################################################
+# > nix-diff.sh 90 92                                                          #
+# + gnumake-4.2.1                                                              #
+# + gnumake-4.2.1-doc                                                          #
+# - htmldoc-1.8.29                                                             #
+################################################################################
+# The example shows that as of generation 92 and since generation 90,          #
+# gnumake-4.2.1 and gnumake-4.2.1-doc have been installed, while               #
+# htmldoc-1.8.29 has been removed.                                             #
+#                                                                              #
+# The example above shows the default, minimal output mode of this script.     #
+# For more features, run `nix-diff.sh -h` for usage instructions.              #
+################################################################################
+
+usage() {
+    cat <<EOF
+usage: nix-diff.sh [-h] [-p profile | -s] [range]
+-h:         print this message before exiting
+-q:         list the derivations installed in the parent generation
+-l:         diff every available intermediate generation between parent and
+            child
+-p profile: specify the Nix profile to use
+            * defaults to ~/.nix-profile
+-s:         use the system profile
+            * equivalent to: -p /nix/var/nix/profiles/system
+profile:    * should be something like /nix/var/nix/profiles/default, not a
+              generation link like /nix/var/nix/profiles/default-2-link
+range:      the range of generations to diff
+            * the following patterns are allowed, where A, B, and N are positive
+              integers, and G is the currently active generation:
+                A..B => diffs from generation A to generation B
+                ~N   => diffs from the Nth newest generation (older than G) to G
+                A    => diffs from generation A to G
+            * defaults to ~1
+EOF
+}
+
+usage_tip() {
+    echo 'run `nix-diff.sh -h` for usage instructions' >&2
+    exit 1
+}
+
+while getopts :hqlp:s opt; do
+    case $opt in
+        h)
+            usage
+            exit
+            ;;
+        q)
+            opt_query=1
+            ;;
+        l)
+            opt_log=1
+            ;;
+        p)
+            opt_profile=$OPTARG
+            ;;
+        s)
+            opt_profile=/nix/var/nix/profiles/system
+            ;;
+        \?)
+            echo "error: invalid option -$OPTARG" >&2
+            usage_tip
+            ;;
+    esac
+done
+shift $((OPTIND-1))
+
+if [ -n "$opt_profile" ]; then
+    if ! [ -L "$opt_profile" ]; then
+        echo "error: expecting \`$opt_profile\` to be a symbolic link" >&2
+        usage_tip
+    fi
+else
+    opt_profile=$(readlink ~/.nix-profile)
+    if (( $? != 0 )); then
+        echo 'error: unable to dereference `~/.nix-profile`' >&2
+        echo 'specify the profile manually with the `-p` flag' >&2
+        usage_tip
+    fi
+fi
+
+list_gens() {
+    nix-env -p "$opt_profile" --list-generations \
+        | sed -r 's:^\s*::' \
+        | cut -d' ' -f1
+}
+
+current_gen() {
+    nix-env -p "$opt_profile" --list-generations \
+        | grep -E '\(current\)\s*$' \
+        | sed -r 's:^\s*::' \
+        | cut -d' ' -f1
+}
+
+neg_gen() {
+    local i=0 from=$1 n=$2 tmp
+    for gen in $(list_gens | sort -rn); do
+        if ((gen < from)); then
+            tmp=$gen
+            ((i++))
+            ((i == n)) && break
+        fi
+    done
+    if ((i < n)); then
+        echo -n "error: there aren't $n generation(s) older than" >&2
+        echo " generation $from" >&2
+        return 1
+    fi
+    echo $tmp
+}
+
+match() {
+    argv=("$@")
+    for i in $(seq $(($#-1))); do
+        if grep -E "^${argv[$i]}\$" <(echo "$1") >/dev/null; then
+            echo $i
+            return
+        fi
+    done
+    echo 0
+}
+
+case $(match "$1" '' '[0-9]+' '[0-9]+\.\.[0-9]+' '~[0-9]+') in
+    1)
+        diffTo=$(current_gen)
+        diffFrom=$(neg_gen $diffTo 1)
+        (($? == 1)) && usage_tip
+        ;;
+    2)
+        diffFrom=$1
+        diffTo=$(current_gen)
+        ;;
+    3)
+        diffFrom=${1%%.*}
+        diffTo=${1##*.}
+        ;;
+    4)
+        diffTo=$(current_gen)
+        diffFrom=$(neg_gen $diffTo ${1#*~})
+        (($? == 1)) && usage_tip
+        ;;
+    0)
+        echo 'error: invalid invocation' >&2
+        usage_tip
+        ;;
+esac
+
+dirA="${opt_profile}-${diffFrom}-link"
+dirB="${opt_profile}-${diffTo}-link"
+
+declare -a temp_files
+temp_length() {
+    echo -n ${#temp_files[@]}
+}
+temp_make() {
+    temp_files[$(temp_length)]=$(mktemp)
+}
+temp_clean() {
+    rm -f ${temp_files[@]}
+}
+temp_name() {
+    echo -n "${temp_files[$(($(temp_length)-1))]}"
+}
+trap 'temp_clean' EXIT
+
+temp_make
+versA=$(temp_name)
+refs=$(nix-store -q --references "$dirA")
+(( $? != 0 )) && exit 1
+echo "$refs" \
+    | grep -v env-manifest.nix \
+    | sort \
+          > "$versA"
+
+print_tag() {
+    local gen=$1
+    nix-env -p "$opt_profile" --list-generations \
+        | grep -E "^\s*${gen}" \
+        | sed -r 's:^\s*::' \
+        | sed -r 's:\s*$::'
+}
+
+if [ -n "$opt_query" ]; then
+    print_tag $diffFrom
+    cat "$versA" \
+        | sed -r 's:^[^-]+-(.*)$:    \1:'
+
+    print_line=1
+fi
+
+if [ -n "$opt_log" ]; then
+    gens=$(for gen in $(list_gens); do
+               ((diffFrom < gen && gen < diffTo)) && echo $gen
+           done)
+    # Force the $diffTo generation to be included in this list, instead of using
+    # `gen <= diffTo` in the preceding loop, so we encounter an error upon the
+    # event of its nonexistence.
+    gens=$(echo "$gens"
+           echo $diffTo)
+else
+    gens=$diffTo
+fi
+
+temp_make
+add=$(temp_name)
+temp_make
+rem=$(temp_name)
+temp_make
+out=$(temp_name)
+
+for gen in $gens; do
+
+    [ -n "$print_line" ] && echo
+
+    temp_make
+    versB=$(temp_name)
+
+    dirB="${opt_profile}-${gen}-link"
+    refs=$(nix-store -q --references "$dirB")
+    (( $? != 0 )) && exit 1
+    echo "$refs" \
+        | grep -v env-manifest.nix \
+        | sort \
+              > "$versB"
+
+    in=$(comm -3 -1 "$versA" "$versB")
+    sed -r 's:^[^-]*-(.*)$:\1+:' <(echo "$in") \
+        | sort -f \
+               > "$add"
+
+    un=$(comm -3 -2 "$versA" "$versB")
+    sed -r 's:^[^-]*-(.*)$:\1-:' <(echo "$un") \
+        | sort -f \
+               > "$rem"
+
+    cat "$rem" "$add" \
+        | sort -f \
+        | sed -r 's:(.*)-$:- \1:' \
+        | sed -r 's:(.*)\+$:\+ \1:' \
+        | grep -v '^$' \
+              > "$out"
+
+    if [ -n "$opt_query" -o -n "$opt_log" ]; then
+
+        lines=$(wc -l "$out" | cut -d' ' -f1)
+        tag=$(print_tag "$gen")
+        (( $? != 0 )) && exit 1
+        if [ $lines -eq 0 ]; then
+            echo "$tag   (no change)"
+        else
+            echo "$tag"
+        fi
+        cat "$out" \
+            | sed 's:^:    :'
+
+        print_line=1
+
+    else
+        echo "diffing from generation $diffFrom to $diffTo"
+        cat "$out"
+    fi
+
+    versA=$versB
+
+done
+
+exit 0

From a7c4c89138b34d4cd088dbb32afd65119eda20f6 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Sun, 19 Mar 2017 18:10:40 -0500
Subject: [PATCH 25/41] Add top-level attr for lldb_4

---
 pkgs/top-level/all-packages.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index c8541015746f9..51868b21d64b2 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -5384,6 +5384,7 @@ with pkgs;
   lld = llvmPackages_4.lld;
 
   lldb = llvmPackages.lldb;
+  lldb_4 = llvmPackages_4.lldb;
 
   llvm = llvmPackages.llvm;
 

From cf3e1380242a9a216e62f247c73a45006b995186 Mon Sep 17 00:00:00 2001
From: Orivej Desh <orivej@gmx.fr>
Date: Sun, 12 Mar 2017 21:45:40 +0000
Subject: [PATCH 26/41] objconv: 2.16 -> 2.44

---
 .../tools/misc/objconv/default.nix            | 39 ++++++++++++-------
 1 file changed, 26 insertions(+), 13 deletions(-)

diff --git a/pkgs/development/tools/misc/objconv/default.nix b/pkgs/development/tools/misc/objconv/default.nix
index bae9f07bda48c..3c309493a33b5 100644
--- a/pkgs/development/tools/misc/objconv/default.nix
+++ b/pkgs/development/tools/misc/objconv/default.nix
@@ -1,26 +1,39 @@
-{ stdenv, fetchFromGitHub }:
+{ stdenv, fetchurl, unzip }:
 
 stdenv.mkDerivation rec {
   name = "objconv-${version}";
-  version = "2.16";
+  version = "2.44";
 
-  src = fetchFromGitHub {
-    owner  = "vertis";
-    repo   = "objconv";
-    rev    = "${version}";
-    sha256 = "1by2bbrampwv0qy8vn4hhs49rykczyj7q8g373ym38da3c95bym2";
+  src = fetchurl {
+    # Versioned archive of objconv sources maintained by orivej.
+    url = "https://archive.org/download/objconv/${name}.zip";
+    sha256 = "1dlnpv8qwz0rwivpbgk84kmsjz3vh1i149z44ha2dvg8afzyfhjl";
   };
 
-  buildPhase = "c++ -o objconv -O2 src/*.cpp";
+  nativeBuildInputs = [ unzip ];
 
-  installPhase = "mkdir -p $out/bin && mv objconv $out/bin";
+  outputs = [ "out" "doc" ];
+
+  unpackPhase = ''
+    mkdir -p "$name"
+    cd "$name"
+    unpackFile "$src"
+    unpackFile source.zip
+  '';
+
+  buildPhase = "c++ -o objconv -O2 *.cpp";
+
+  installPhase = ''
+    mkdir -p $out/bin $out/doc/objconv
+    mv objconv $out/bin
+    mv objconv-instructions.pdf $out/doc/objconv
+  '';
 
   meta = with stdenv.lib; {
-    description = "Used for converting object files between COFF/PE, OMF, ELF and Mach-O formats for all 32-bit and 64-bit x86 platforms.";
+    description = "Object and executable file converter, modifier and disassembler";
     homepage = http://www.agner.org/optimize/;
     license = licenses.gpl2;
-    maintainers = with maintainers; [ vrthra ];
-    platforms = with platforms; unix;
+    maintainers = with maintainers; [ orivej vrthra ];
+    platforms = platforms.unix;
   };
-
 }

From 86571294f5196af933146ce6e53fb02f9ef57ddf Mon Sep 17 00:00:00 2001
From: ndowens <ndowens04@gmail.com>
Date: Sun, 19 Mar 2017 18:32:47 -0500
Subject: [PATCH 27/41] calcurse: 4.0.0 -> 4.2.2

---
 pkgs/applications/misc/calcurse/default.nix | 25 ++++++++++++---------
 1 file changed, 15 insertions(+), 10 deletions(-)

diff --git a/pkgs/applications/misc/calcurse/default.nix b/pkgs/applications/misc/calcurse/default.nix
index 9211ef0ab83e3..3f22d1629e27b 100644
--- a/pkgs/applications/misc/calcurse/default.nix
+++ b/pkgs/applications/misc/calcurse/default.nix
@@ -1,18 +1,23 @@
-{stdenv, fetchurl, ncurses, gettext}:
+{stdenv, fetchurl, ncurses, gettext, python3, makeWrapper }:
 
-stdenv.mkDerivation {
-  name = "calcurse-4.0.0";
+stdenv.mkDerivation rec {
+  name = "calcurse-${version}";
+  version = "4.2.2";
 
   src = fetchurl {
-    url = http://calcurse.org/files/calcurse-4.0.0.tar.gz;
-    sha256 = "0d33cpkbhyidvm3xx6iw9ljqdvl6477c2kcwix3bs63nj0ch06v2";
+    url = "http://calcurse.org/files/${name}.tar.gz";
+    sha256 = "0il0y06akdqgy0f9p40m4x6arn66nh7sr1w1i41bszycs7div266";
   };
 
-  buildInputs = [ncurses gettext];
+  buildInputs = [ncurses gettext python3 ];
+  nativeBuildInputs = [ makeWrapper ];
 
-  meta = {
+  postInstall = ''
+    makeWrapper ${python3}/bin/python3 $out/bin/calcurse-caldav 
+      '';
+
+  meta = with stdenv.lib; {
     description = "A calendar and scheduling application for the command line";
-    version = "4.0.0";
     longDescription = ''
       calcurse is a calendar and scheduling application for the command line. It helps
       keep track of events, appointments and everyday tasks. A configurable notification
@@ -21,7 +26,7 @@ stdenv.mkDerivation {
       be used to filter and format appointments, making it suitable for use in scripts.
     '';
     homepage = http://calcurse.org/;
-    license = stdenv.lib.licenses.bsd2;
-    platforms = stdenv.lib.platforms.linux;
+    license = licenses.bsd2;
+    platforms = platforms.linux;
   };
 }

From a31041a1b999a7132ec97b57d08b060ec7c7950d Mon Sep 17 00:00:00 2001
From: Shane Pearlman <shanemikel1@gmail.com>
Date: Sun, 19 Mar 2017 16:30:59 -0700
Subject: [PATCH 28/41] nix-diff.sh maintainer script: update usage message for
 new flags

---
 maintainers/scripts/nix-diff.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/maintainers/scripts/nix-diff.sh b/maintainers/scripts/nix-diff.sh
index 9e85b116bc921..0c65e29cf4351 100755
--- a/maintainers/scripts/nix-diff.sh
+++ b/maintainers/scripts/nix-diff.sh
@@ -23,7 +23,7 @@
 
 usage() {
     cat <<EOF
-usage: nix-diff.sh [-h] [-p profile | -s] [range]
+usage: nix-diff.sh [-h | [-p profile | -s] [-q] [-l] [range]]
 -h:         print this message before exiting
 -q:         list the derivations installed in the parent generation
 -l:         diff every available intermediate generation between parent and

From c5ce21ec8042c99ad11572843416a58ea400b82c Mon Sep 17 00:00:00 2001
From: ndowens <ndowens04@gmail.com>
Date: Sun, 19 Mar 2017 18:34:46 -0500
Subject: [PATCH 29/41] tiled: 0.17.0 -> 0.18.2

---
 pkgs/applications/editors/tiled/default.nix | 15 ++++++++-------
 1 file changed, 8 insertions(+), 7 deletions(-)

diff --git a/pkgs/applications/editors/tiled/default.nix b/pkgs/applications/editors/tiled/default.nix
index 5f2fffa5f508f..be518b9336a84 100644
--- a/pkgs/applications/editors/tiled/default.nix
+++ b/pkgs/applications/editors/tiled/default.nix
@@ -1,16 +1,17 @@
-{ stdenv, fetchurl, pkgconfig, qmakeHook
+{ stdenv, fetchFromGitHub, pkgconfig, qmakeHook
 , python, qtbase, qttools, zlib }:
 
 let
 #  qtEnv = with qt5; env "qt-${qtbase.version}" [ qtbase qttools ];
 in stdenv.mkDerivation rec {
   name = "tiled-${version}";
-  version = "0.17.0";
+  version = "0.18.2";
 
-  src = fetchurl {
-    name = "${name}.tar.gz";
-    url = "https://github.com/bjorn/tiled/archive/v${version}.tar.gz";
-    sha256 = "0c9gykxmq0sk0yyfdq81g9psd922scqzn5asskjydj84d80f5z7p";
+  src = fetchFromGitHub {
+    owner = "bjorn";
+    repo = "tiled";
+    rev = "v${version}";
+    sha256 = "087jl36g6w2g5l70gz573iwyvx3r7i8fijl3y4mmmf8pyqdyq1n2";
   };
 
   nativeBuildInputs = [ pkgconfig qmakeHook ];
@@ -26,6 +27,6 @@ in stdenv.mkDerivation rec {
       gpl2Plus	# all the rest
     ];
     platforms = platforms.linux;
-    maintainers = with maintainers; [ nckx ];
+    maintainers = [ maintainers.nckx ];
   };
 }

From 86c173cd0297ec85bb36199e1ccd72887a68f61a Mon Sep 17 00:00:00 2001
From: "Rommel M. Martinez" <ebzzry@gmail.com>
Date: Sun, 19 Mar 2017 15:46:38 +0800
Subject: [PATCH 30/41] emem: 0.2.43 -> 0.2.44

---
 pkgs/applications/misc/emem/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/emem/default.nix b/pkgs/applications/misc/emem/default.nix
index 0ac6f21b9fdb6..706f39ad2a1fd 100644
--- a/pkgs/applications/misc/emem/default.nix
+++ b/pkgs/applications/misc/emem/default.nix
@@ -2,14 +2,14 @@
 
 stdenv.mkDerivation rec {
   pname = "emem";
-  version = "0.2.43";
+  version = "0.2.44";
   name = "${pname}-${version}";
 
   inherit jdk;
 
   src = fetchurl {
     url = "https://github.com/ebzzry/${pname}/releases/download/v${version}/${pname}.jar";
-    sha256 = "0p3v28vjqyx961sfsd1h2cg2g2q0v03qd87dppbxqp7g5ppls91x";
+    sha256 = "1n91j0hd43nnc1bg2qyrx8kfzc2zkw6dvsf494aa82107r0rqbmf";
   };
 
   phases = [ "buildPhase" "installPhase" ];

From ed64de6295c2ccdaf5fe63ba4c2989aff52617fa Mon Sep 17 00:00:00 2001
From: ndowens <ndowens04@gmail.com>
Date: Sun, 19 Mar 2017 19:11:24 -0500
Subject: [PATCH 31/41] chirp: 20161018 -> 20170311

---
 pkgs/applications/misc/chirp/default.nix | 14 ++++++--------
 1 file changed, 6 insertions(+), 8 deletions(-)

diff --git a/pkgs/applications/misc/chirp/default.nix b/pkgs/applications/misc/chirp/default.nix
index 469da1f6ec42d..77c21114ec569 100644
--- a/pkgs/applications/misc/chirp/default.nix
+++ b/pkgs/applications/misc/chirp/default.nix
@@ -1,24 +1,22 @@
 { stdenv, fetchurl, libxml2Python, libxslt, makeWrapper
 , python, pyserial, pygtk
 }:
-let
-  version = "20161018";
-in
+
 stdenv.mkDerivation rec {
   name = "chirp-daily-${version}";
-  inherit version;
+  version = "20170311";
 
   src = fetchurl {
-    url = "http://trac.chirp.danplanet.com/chirp_daily/daily-${version}/chirp-daily-${version}.tar.gz";
-    sha256 = "0f3r919az4vvcgxzqmxvhrxa2byzk5algy7srzzs15ihkvyxcwkb";
+    url = "http://trac.chirp.danplanet.com/chirp_daily/daily-${version}/${name}.tar.gz";
+    sha256 = "0mvj650vm3bfk94b174gl99fj4jigrx38f1iciz1cp3gn8hcrcpj";
   };
 
+  nativeBuildInputs = [ makeWrapper ];
   buildInputs = [
-    makeWrapper
     pyserial pygtk libxml2Python libxslt pyserial
   ];
 
-  phases = [ "unpackPhase" "installPhase" "fixupPhase" ];
+  # phases = [ "unpackPhase" "installPhase" "fixupPhase" ];
 
   installPhase = ''
     mkdir -p $out/bin $out/share/chirp

From 103c918d719afae7aa82748d229d702383177efb Mon Sep 17 00:00:00 2001
From: ndowens <ndowens04@gmail.com>
Date: Sun, 19 Mar 2017 19:14:20 -0500
Subject: [PATCH 32/41] Revert "chirp: 20161018 -> 20170311"

---
 pkgs/applications/misc/chirp/default.nix | 14 ++++++++------
 1 file changed, 8 insertions(+), 6 deletions(-)

diff --git a/pkgs/applications/misc/chirp/default.nix b/pkgs/applications/misc/chirp/default.nix
index 77c21114ec569..469da1f6ec42d 100644
--- a/pkgs/applications/misc/chirp/default.nix
+++ b/pkgs/applications/misc/chirp/default.nix
@@ -1,22 +1,24 @@
 { stdenv, fetchurl, libxml2Python, libxslt, makeWrapper
 , python, pyserial, pygtk
 }:
-
+let
+  version = "20161018";
+in
 stdenv.mkDerivation rec {
   name = "chirp-daily-${version}";
-  version = "20170311";
+  inherit version;
 
   src = fetchurl {
-    url = "http://trac.chirp.danplanet.com/chirp_daily/daily-${version}/${name}.tar.gz";
-    sha256 = "0mvj650vm3bfk94b174gl99fj4jigrx38f1iciz1cp3gn8hcrcpj";
+    url = "http://trac.chirp.danplanet.com/chirp_daily/daily-${version}/chirp-daily-${version}.tar.gz";
+    sha256 = "0f3r919az4vvcgxzqmxvhrxa2byzk5algy7srzzs15ihkvyxcwkb";
   };
 
-  nativeBuildInputs = [ makeWrapper ];
   buildInputs = [
+    makeWrapper
     pyserial pygtk libxml2Python libxslt pyserial
   ];
 
-  # phases = [ "unpackPhase" "installPhase" "fixupPhase" ];
+  phases = [ "unpackPhase" "installPhase" "fixupPhase" ];
 
   installPhase = ''
     mkdir -p $out/bin $out/share/chirp

From c2630d203e26826bc33c77957144640c735b7be5 Mon Sep 17 00:00:00 2001
From: ndowens <ndowens04@gmail.com>
Date: Sun, 19 Mar 2017 19:23:57 -0500
Subject: [PATCH 33/41] chirp: 20161018 -> 20170311

---
 pkgs/applications/misc/chirp/default.nix | 17 ++++++-----------
 1 file changed, 6 insertions(+), 11 deletions(-)

diff --git a/pkgs/applications/misc/chirp/default.nix b/pkgs/applications/misc/chirp/default.nix
index 469da1f6ec42d..67d37489feb07 100644
--- a/pkgs/applications/misc/chirp/default.nix
+++ b/pkgs/applications/misc/chirp/default.nix
@@ -1,25 +1,20 @@
 { stdenv, fetchurl, libxml2Python, libxslt, makeWrapper
-, python, pyserial, pygtk
-}:
-let
-  version = "20161018";
-in
+, python, pyserial, pygtk }:
+
 stdenv.mkDerivation rec {
   name = "chirp-daily-${version}";
-  inherit version;
+  version = "20170311";
 
   src = fetchurl {
-    url = "http://trac.chirp.danplanet.com/chirp_daily/daily-${version}/chirp-daily-${version}.tar.gz";
-    sha256 = "0f3r919az4vvcgxzqmxvhrxa2byzk5algy7srzzs15ihkvyxcwkb";
+    url = "http://trac.chirp.danplanet.com/chirp_daily/daily-${version}/${name}.tar.gz";
+    sha256 = "0mvj650vm3bfk94b174gl99fj4jigrx38f1iciz1cp3gn8hcrcpj";
   };
 
+  nativeBuildInputs = [ makeWrapper ];
   buildInputs = [
-    makeWrapper
     pyserial pygtk libxml2Python libxslt pyserial
   ];
 
-  phases = [ "unpackPhase" "installPhase" "fixupPhase" ];
-
   installPhase = ''
     mkdir -p $out/bin $out/share/chirp
     cp -r . $out/share/chirp/

From 00cc586f6fc24edfda18e3ba9c30a81fc0a9e124 Mon Sep 17 00:00:00 2001
From: ndowens <ndowens04@gmail.com>
Date: Sun, 19 Mar 2017 19:37:21 -0500
Subject: [PATCH 34/41] sigil: 0.9.6 -> 0.9.7

---
 pkgs/applications/editors/sigil/default.nix | 19 +++++++++----------
 1 file changed, 9 insertions(+), 10 deletions(-)

diff --git a/pkgs/applications/editors/sigil/default.nix b/pkgs/applications/editors/sigil/default.nix
index 7a066b068e1a8..0c716ed63c14a 100644
--- a/pkgs/applications/editors/sigil/default.nix
+++ b/pkgs/applications/editors/sigil/default.nix
@@ -6,10 +6,10 @@
 
 stdenv.mkDerivation rec {
   name = "sigil-${version}";
-  version = "0.9.6";
+  version = "0.9.7";
 
   src = fetchFromGitHub {
-    sha256 = "0hihd5f3avpdvxwp5j80qdg74zbw7p20y6j9q8cw7wd0bak58h9c";
+    sha256 = "17m2f7pj2sx5rxrbry6wk1lvviy8fi2m270h47sisywnrhddarh7";
     rev = version;
     repo = "Sigil";
     owner = "Sigil-Ebook";
@@ -19,11 +19,11 @@ stdenv.mkDerivation rec {
 
   propagatedBuildInputs = with python3Packages; [ lxml ];
 
+  nativeBuildInputs = [ cmake pkgconfig makeWrapper ];
+
   buildInputs = [
-    cmake pkgconfig
     boost xercesc qtbase qttools qtwebkit qtxmlpatterns
-    python3 python3Packages.lxml makeWrapper
-  ];
+    python3 python3Packages.lxml ];
 
   preFixup = ''
     wrapProgram "$out/bin/sigil" \
@@ -32,12 +32,11 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
-  meta = {
+  meta = with stdenv.lib; {
     description = "Free, open source, multi-platform ebook (ePub) editor";
     homepage = https://github.com/Sigil-Ebook/Sigil/;
-    license = stdenv.lib.licenses.gpl3;
-    inherit version;
-    maintainers = with stdenv.lib.maintainers; [ ramkromberg ];
-    platforms = with stdenv.lib.platforms; linux;
+    license = licenses.gpl3;
+    maintainers =[ maintainers.ramkromberg ];
+    platforms = platforms.linux;
   };
 }

From baf07b580cdc6358915d04d654cf2027ec845afd Mon Sep 17 00:00:00 2001
From: ndowens <ndowens04@gmail.com>
Date: Sun, 19 Mar 2017 20:02:30 -0500
Subject: [PATCH 35/41] devilspie2: 0.39 -> 0.42

---
 pkgs/applications/misc/devilspie2/default.nix | 15 ++++++---------
 1 file changed, 6 insertions(+), 9 deletions(-)

diff --git a/pkgs/applications/misc/devilspie2/default.nix b/pkgs/applications/misc/devilspie2/default.nix
index 96b4296911553..4a7c4d7ec3049 100644
--- a/pkgs/applications/misc/devilspie2/default.nix
+++ b/pkgs/applications/misc/devilspie2/default.nix
@@ -2,18 +2,15 @@
 
 stdenv.mkDerivation rec {
   name = "devilspie2-${version}";
-  version = "0.39";
+  version = "0.42";
 
   src = fetchurl {
-    url = "http://download.savannah.gnu.org/releases/devilspie2/devilspie2_0.39-src.tar.gz";
-    sha256 = "07b74ffc078e5f01525d9da7a1978b4c1a9725b814b344f83a1a203cf4caae09";
+    url = "http://download.savannah.gnu.org/releases/devilspie2/devilspie2_${version}-src.tar.gz";
+    sha256 = "119zb9x5i3y4cp30h4113psqxb5d7zxiyijpq02g8kds1wqvrx8i";
   };
 
-  buildInputs = [ intltool pkgconfig glib gtk lua libwnck3 ];
-
-  patchPhase = ''
-    sed -i -e s@/usr/local@$out@ Makefile
-  '';
+  nativeBuildInputs = [ intltool pkgconfig ];
+  buildInputs = [ glib gtk lua libwnck3 ];
 
   installPhase = ''
     mkdir -p $out/bin $out/share/man/man1
@@ -22,7 +19,7 @@ stdenv.mkDerivation rec {
   '';
 
   meta = with stdenv.lib; {
-    description = "Devilspie2 is a window matching utility";
+    description = "A window matching utility";
     longDescription = ''
       Devilspie2 is a window matching utility, allowing the user to
       perform scripted actions on windows as they are created. For

From 4c25a47cbd6d8d9f8911499f64669202e96ceff0 Mon Sep 17 00:00:00 2001
From: ndowens <ndowens04@gmail.com>
Date: Sun, 19 Mar 2017 20:12:46 -0500
Subject: [PATCH 36/41] copyq: 2.5.0 -> 2.9.0

---
 pkgs/applications/misc/copyq/default.nix | 24 ++++++++++++++----------
 1 file changed, 14 insertions(+), 10 deletions(-)

diff --git a/pkgs/applications/misc/copyq/default.nix b/pkgs/applications/misc/copyq/default.nix
index 0892f8899324b..7461f6853f47f 100644
--- a/pkgs/applications/misc/copyq/default.nix
+++ b/pkgs/applications/misc/copyq/default.nix
@@ -1,21 +1,25 @@
-{ stdenv, fetchurl, cmake, qt4, libXfixes, libXtst}:
+{ stdenv, fetchFromGitHub, cmake, qt4, libXfixes, libXtst}:
 
-let version = "2.5.0";
-in
-stdenv.mkDerivation {
+stdenv.mkDerivation rec {
   name = "CopyQ-${version}";
-  src  = fetchurl {
-    url    = "https://github.com/hluk/CopyQ/archive/v${version}.tar.gz";
-    sha256 = "7726745056e8d82625531defc75b2a740d3c42131ecce1f3181bc0a0bae51fb1";
+  version = "2.9.0";
+
+  src  = fetchFromGitHub {
+    owner = "hluk";
+    repo = "CopyQ";
+    rev = "v${version}";
+    sha256 = "1gnqsfh50w3qcnbghkpjr5qs42fgl6643lmg4mg4wam8a852s64f";
   };
 
-  buildInputs = [ cmake qt4 libXfixes libXtst ];
+  nativeBuildInputs = [ cmake ];
+  
+  buildInputs = [ qt4 libXfixes libXtst ];
 
   meta = with stdenv.lib; {
-    homepage    = "https://hluk.github.io/CopyQ";
+    homepage    = https://hluk.github.io/CopyQ;
     description = "Clipboard Manager with Advanced Features";
     license     = licenses.gpl3;
-    maintainers = with maintainers; [ willtim ];
+    maintainers = [ maintainers.willtim ];
     # NOTE: CopyQ supports windows and osx, but I cannot test these.
     # OSX build requires QT5.
     platforms   = platforms.linux;

From 8cf11d9c1cecacc5f768848b899f1305a8fc465c Mon Sep 17 00:00:00 2001
From: "Rommel M. Martinez" <ebzzry@gmail.com>
Date: Mon, 20 Mar 2017 09:24:10 +0800
Subject: [PATCH 37/41] emem: 0.2.44 -> 0.2.45

---
 pkgs/applications/misc/emem/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/emem/default.nix b/pkgs/applications/misc/emem/default.nix
index 706f39ad2a1fd..b3424f367f1ab 100644
--- a/pkgs/applications/misc/emem/default.nix
+++ b/pkgs/applications/misc/emem/default.nix
@@ -2,14 +2,14 @@
 
 stdenv.mkDerivation rec {
   pname = "emem";
-  version = "0.2.44";
+  version = "0.2.45";
   name = "${pname}-${version}";
 
   inherit jdk;
 
   src = fetchurl {
     url = "https://github.com/ebzzry/${pname}/releases/download/v${version}/${pname}.jar";
-    sha256 = "1n91j0hd43nnc1bg2qyrx8kfzc2zkw6dvsf494aa82107r0rqbmf";
+    sha256 = "1qjlz0sqjhx11vw8cc39h0sjgnfkrhgh94pv84z37b8hn42qingb";
   };
 
   phases = [ "buildPhase" "installPhase" ];

From 93446a20600cd3b6c19182ea3f653a1ea2b2d305 Mon Sep 17 00:00:00 2001
From: Tuomas Tynkkynen <tuomas@tuxera.com>
Date: Mon, 20 Mar 2017 06:37:01 +0200
Subject: [PATCH 38/41] release.nix: Don't block release on aarch64 failures

---
 pkgs/top-level/release.nix | 6 ------
 1 file changed, 6 deletions(-)

diff --git a/pkgs/top-level/release.nix b/pkgs/top-level/release.nix
index 3a9a304a72d28..b5207879a5e67 100644
--- a/pkgs/top-level/release.nix
+++ b/pkgs/top-level/release.nix
@@ -41,23 +41,18 @@ let
               jobs.lib-tests
               jobs.stdenv.x86_64-linux
               jobs.stdenv.i686-linux
-              jobs.stdenv.aarch64-linux
               jobs.stdenv.x86_64-darwin
               jobs.linux.x86_64-linux
               jobs.linux.i686-linux
-              jobs.linux.aarch64-linux
               jobs.python.x86_64-linux
               jobs.python.i686-linux
-              jobs.python.aarch64-linux
               jobs.python.x86_64-darwin
               jobs.python3.x86_64-linux
               jobs.python3.i686-linux
-              jobs.python3.aarch64-linux
               jobs.python3.x86_64-darwin
               # Many developers use nix-repl
               jobs.nix-repl.x86_64-linux
               jobs.nix-repl.i686-linux
-              jobs.nix-repl.aarch64-linux
               jobs.nix-repl.x86_64-darwin
               # Needed by travis-ci to test PRs
               jobs.nox.i686-linux
@@ -66,7 +61,6 @@ let
               # Ensure that X11/GTK+ are in order.
               jobs.thunderbird.x86_64-linux
               jobs.thunderbird.i686-linux
-              jobs.thunderbird.aarch64-linux
               # Ensure that basic stuff works on darwin
               jobs.git.x86_64-darwin
               jobs.mysql.x86_64-darwin

From fee7e73538a25cac95e705c605f438df7e7eb71d Mon Sep 17 00:00:00 2001
From: Victor Calvert <calvertvl@gmail.com>
Date: Mon, 20 Mar 2017 00:23:06 -0400
Subject: [PATCH 39/41] Adding self as maintainer

---
 lib/maintainers.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/lib/maintainers.nix b/lib/maintainers.nix
index d6cb2722b33c3..514e62bb916b1 100644
--- a/lib/maintainers.nix
+++ b/lib/maintainers.nix
@@ -82,6 +82,7 @@
   bzizou = "Bruno Bzeznik <Bruno@bzizou.net>";
   c0dehero = "CodeHero <codehero@nerdpol.ch>";
   calrama = "Moritz Maxeiner <moritz@ucworks.org>";
+  calvertvl = "Victor Calvert <calvertvl@gmail.com>";
   campadrenalin = "Philip Horger <campadrenalin@gmail.com>";
   canndrew = "Andrew Cann <shum@canndrew.org>";
   carlsverre = "Carl Sverre <accounts@carlsverre.com>";

From bae9315a33e825cfb0a625fcdf91bec8df2ccad8 Mon Sep 17 00:00:00 2001
From: Victor Calvert <calvertvl@gmail.com>
Date: Mon, 20 Mar 2017 00:25:50 -0400
Subject: [PATCH 40/41] src: 1.11 -> 1.12

---
 pkgs/applications/version-management/src/default.nix | 12 +++++++-----
 1 file changed, 7 insertions(+), 5 deletions(-)

diff --git a/pkgs/applications/version-management/src/default.nix b/pkgs/applications/version-management/src/default.nix
index 2bff15adc69d9..d2bb688737208 100644
--- a/pkgs/applications/version-management/src/default.nix
+++ b/pkgs/applications/version-management/src/default.nix
@@ -1,11 +1,12 @@
 { stdenv, fetchurl, python, rcs, git }:
 
 stdenv.mkDerivation rec {
-  name = "src-1.11";
+  name = "src-${version}";
+  version = "1.12";
 
   src = fetchurl {
     url = "http://www.catb.org/~esr/src/${name}.tar.gz";
-    sha256 = "07kj0ri0s0vn8s54yvkyzaag332spxs0379r718b80y31c4mgbyl";
+    sha256 = "1m6rjbizx9win3jkciyx176sfy98r5arb1g3l6aqnqam9gpr44zm";
   };
 
   buildInputs = [ python rcs git ];
@@ -16,10 +17,11 @@ stdenv.mkDerivation rec {
 
   makeFlags = [ "prefix=$(out)" ];
 
-  meta = {
+  meta = with stdenv.lib; {
     description = "Simple single-file revision control";
     homepage = http://www.catb.org/~esr/src/;
-    license = stdenv.lib.licenses.bsd3;
-    platforms = stdenv.lib.platforms.all;
+    license = licenses.bsd3;
+    platforms = platforms.all;
+    maintainers = with maintainers; [ calvertvl ];
   };
 }

From 6e587c29dc78bb7944a685cfafbe4b6663a3cf97 Mon Sep 17 00:00:00 2001
From: Victor Calvert <calvertvl@gmail.com>
Date: Mon, 20 Mar 2017 00:27:49 -0400
Subject: [PATCH 41/41] src: wrap to properly resolve rcs at runtime

---
 pkgs/applications/version-management/src/default.nix | 9 +++++++--
 1 file changed, 7 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/version-management/src/default.nix b/pkgs/applications/version-management/src/default.nix
index d2bb688737208..2fd45ec7fc02e 100644
--- a/pkgs/applications/version-management/src/default.nix
+++ b/pkgs/applications/version-management/src/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, python, rcs, git }:
+{ stdenv, fetchurl, python, rcs, git, makeWrapper }:
 
 stdenv.mkDerivation rec {
   name = "src-${version}";
@@ -9,7 +9,7 @@ stdenv.mkDerivation rec {
     sha256 = "1m6rjbizx9win3jkciyx176sfy98r5arb1g3l6aqnqam9gpr44zm";
   };
 
-  buildInputs = [ python rcs git ];
+  buildInputs = [ python rcs git makeWrapper ];
 
   preConfigure = ''
     patchShebangs .
@@ -17,6 +17,11 @@ stdenv.mkDerivation rec {
 
   makeFlags = [ "prefix=$(out)" ];
 
+  postInstall = ''
+    wrapProgram $out/bin/src \
+      --suffix PATH ":" "${rcs}/bin"
+  '';
+
   meta = with stdenv.lib; {
     description = "Simple single-file revision control";
     homepage = http://www.catb.org/~esr/src/;