Plot Signatures Missing Substitution Text

[DarioS]

If the plot has large height, the DNA substitution disappears which is plotted when it has small height.

[andreadega]

The dimensions of the notations are tailored to the dimensions that we use in the jpg plotting. When plotting like this to console some deformation is possible, and we could probably improve the code to adjust it. However, this is not a priority for us, so I don't know whether we will fix this. This package is mainly to deliver core methods, while one can use other software for better visualisation.

[andreadega]

As of v2.1.2 this issue is likely to remain unresolved. We have optimised plotting for a specific aspect ratio and pdf format, while the issue here would require rewriting for an arbitrary aspect ratio of the plot.

[gevro]

I noticed this too. What is the dimensions and/or dimension ratio you recommend for plotting?

[andreadega]

We recommend to plot to pdf, for example:

plotSignatures(signature_data_matrix = yourMatrix,
               output_file = yourFile.pdf)

This will generate plots according to our predifined aspect ratio.