Code

merge master#19

Code

Merged

Nic-Ma merged 67 commits intoNic-Ma:masterNic-Ma/MONAI:masterfrom Project-MONAI:masterProject-MONAI/MONAI:masterCopy head branch name to clipboardFeb 1, 2021

+11,438-2,739

Commits

Commits on Dec 17, 2020

• [DLMED] add missing import (#1376)

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  Nic-Ma

  authored
  09638a7

• adds jpeg (#1379)

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  wyli

  authored
  1608b10

• [DLMED] add missing arg in GANTrainer (#1383)

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  Nic-Ma

  authored
  b7ecd7b

Commits on Dec 18, 2020

• 1198 efficient differentiable bilateral filter (#1375)

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  charliebudd

  authored
  70be9ab

• update contributing and normalis* -> normaliz* (#1388)

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  rijobro

  authored
  36b8302

Commits on Dec 28, 2020

• [DLMED] add output_dtype (#1394)

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  Nic-Ma

  authored
  f20e132

Commits on Dec 29, 2020

• with eval_mode(net): (#1384)

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  rijobro

  authored
  a4b1144

Commits on Dec 30, 2020

• 1390 Enhance DynUNet with get_feature_maps API (#1393)

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  Nic-Ma

  authored
  e2c0ed2

Commits on Dec 31, 2020

• adds missing desc (#1403)

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  wyli

  authored
  0c2411e

Commits on Jan 4, 2021

• part of #926 (#1368)

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  3 peopleauthored
  1924b43

Commits on Jan 6, 2021

• Implement dice cross entropy loss (#1409)

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  yiheng-wang-nv

  authored
  115f146

• Unify visualisation (#1381)

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  rijobro

  authored
  a74fef9

• 1405 add bending energy loss (#1408)

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  kate-sann5100

  authored
  5aa5e16

• Fix failures from many pulls from hub.docker.com (Done) (#1406)

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  danielschulz

  authored
  db831ae

Commits on Jan 7, 2021

• fixes dockerfile (#1413)

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  wyli

  authored
  db7bf89

• Wildcard import (#1411)

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  rijobro

  authored
  1f74ca2

• Fixes ci (#1416)

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  wyli

  and

  IsaacYangSLA

  authored
  53c145d

• Improve docker build process (#1419)

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  IsaacYangSLA

  authored
  a4ef691

Commits on Jan 10, 2021

• 1412 local normalized cross correlation (#1415)

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  kate-sann5100

  authored
  1544d0c

Commits on Jan 11, 2021

• 1404 Fixing a few code performance issues (#1423)

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  de-sh

  authored
  3d5554f

• [DLMED] add more clear doc-string (#1425)

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  Nic-Ma

  authored
  3ac6957

• Make master installation clearer (#1426)

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  rijobro

  authored
  d735103

• Refactor the comparison involving not (#1427)

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  deepsource-autofix[bot]

  authored
  2e26a33

• ignore versioneer -- deepsource check (#1429)

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  wyli

  authored
  27919e3

• Remove unnecessary lambda expression (#1428)

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  deepsource-autofix[bot]

  and

  wyli

  authored
  0d59289

Commits on Jan 12, 2021

• update hashes (#1431)

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  wyli

  authored
  fe28bba

• Enhance Rotate90 transform with more check (#1432)

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  Nic-Ma

  authored
  50bcaf1

• Update occ sens (#1430)

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  rijobro

  authored
  70483b6

• Remove methods with unnecessary super delegation. (#1437)

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  deepsource-autofix[bot]

  authored
  df9bc68

• Refactor unnecessary else / elif when if block has a return statement (#1434)

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  deepsource-autofix[bot]

  authored
  85f6283

• 1412 global mutual information (#1421)

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  kate-sann5100

  authored
  a9e3654

• remove isort:skip (#1435)

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  rijobro

  authored
  38aa5dc

• Refactor unnecessary else / elif when if block has a raise statement (#1438)

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  deepsource-autofix[bot]

  authored
  d21e712

Commits on Jan 13, 2021

• Update occ sens (#1439)

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  rijobro

  authored
  3b20de8

• 1433 Add TorchVision transform wrapper (#1436)

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  Nic-Ma

  authored
  da0f0fb

• Refine Brats transform and add missing transforms docs (#1444)

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  Nic-Ma

  and

  monai-bot

  authored
  145d31a

• add aliases to import (#1440)

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  rijobro

  and

  wyli

  authored
  3cb82cf

Commits on Jan 14, 2021

• update clangformat hash (#1449)

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  wyli

  authored
  6003c36

• 909 Drop deprecated APIs in IO transforms (#1448)

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  Nic-Ma

  authored
  8084394

• Remove length check in favour of truthiness of the object (#1445)

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  deepsource-autofix[bot]

  and

  wyli

  authored
  c0983c4

Commits on Jan 15, 2021

• 1442 add LocalNet (#1447)

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  kate-sann5100

  authored
  e115d6c

• faster amazon download (#1450)

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  rijobro

  authored
  f349180

• Remove assert statement from non-test files (#1446)

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  3 peopleauthored
  5e020a8

• New simplelayer SavitzkyGolayFilter() and transform SavitzkyGolaySmooth() (#1418)

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  crnbaker

  authored
  ec70d96

Commits on Jan 18, 2021

• Exposing c++ PHL Implementation in Python API (#1453)

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  charliebudd

  and

  monai-bot

  authored
  bf8f8e2

• 909 develop ImageDataset to replace NiftiDataset (#1461)

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  Nic-Ma

  authored
  d2064e0

Commits on Jan 19, 2021

• 1452 warp layer (#1463)

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  kate-sann5100

  authored
  b26cc24

• enhance mednist dataset (#1466)

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  rijobro

  authored
  91cb8cd

• [WIP]1442 add LocalNet initialization (#1460)

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  kate-sann5100

  authored
  012cf62

Commits on Jan 21, 2021

• 1478 Fix TorchScript issue in AHnet (#1479)

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  Nic-Ma

  authored
  c9d15f1

• Fix for device config script (#1480)

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  3 peopleauthored
  edbad43

Commits on Jan 22, 2021

• [DLMED] fix flake8 issue (#1493)

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  Nic-Ma

  authored
  cb7a9a0

Commits on Jan 23, 2021

• 886 Add IterationMetric refer to to the EpochMetric in ignite (#1488)

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  Nic-Ma

  and

  monai-bot

  authored
  0b7e645

• Add some details on weekly preview build process (#1494)

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  IsaacYangSLA

  authored
  2eada01

Commits on Jan 25, 2021

• remove decorator double negative (#1490)

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  rijobro

  authored
  f840fc5

• Create CODE_OF_CONDUCT.md; update contact (#1495)

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  FMCalisto

  and

  wyli

  authored
  db8f787

Commits on Jan 26, 2021

• 1014 learning rate finder (#1454)

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  rijobro

  authored
  a2da8a1

• 1501-enhance-PR-testing-workflow (#1502)

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  wyli

  authored
  8fef0e1

• change email (#1510)

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  rijobro

  authored
  84826b9

• 1501 workflow cleanup (#1511)

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  wyli

  authored
  3025e8d

Commits on Jan 27, 2021

• Add more Events for MONAI workflow engines (#1474)

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  Nic-Ma

  and

  monai-bot

  authored
  8207e1e

Commits on Jan 28, 2021

• 1452 adjust-warp-layer-grid-pull-user-case (#1470)

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  kate-sann5100

  authored
  f75b67a

• [DLMED] add overwrite option (#1513)

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  Nic-Ma

  and

  ericspod

  authored
  50c4659

Commits on Jan 29, 2021

• [DLMED] Enhance MaskIntensityd transform (#1521)

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  Nic-Ma

  authored
  56c88f6

• 886 add MetricsSaver handler to save metrics and details into files (#1497)

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  Nic-Ma

  and

  monai-bot

  authored
  b3d063c

• unify installation instructions (#1524)

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  rijobro

  authored
  c435327

Commits on Jan 30, 2021

• 1526-DiceCE (#1527)

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  wyli

  authored
  a6cb37c