Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Ploidy option in config file? #59

Closed
cizydorczyk opened this issue Nov 13, 2020 · 2 comments
Closed

Ploidy option in config file? #59

cizydorczyk opened this issue Nov 13, 2020 · 2 comments

Comments

@cizydorczyk
Copy link

Question or Expected behavior
Is there an option (or can one be implemented) to specify ploidy for polishing in the config file? From what I have been able to gather from the documentation, I cannot find one unless I map reads myself and set 'ploidy = 1' directory to nextpolish1.py. I cannot find a way to set ploidy using the config file.

Thank you,
Conrad

@moold
Copy link
Member

moold commented Nov 15, 2020

Hi, you can set polish_options = -p {multithread_jobs} -ploidy 1

@cizydorczyk
Copy link
Author

I must have missed that on my own, thanks!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants