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[Bug]: UserWarning: NWBFile not found within the configuration for core #1939

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rly opened this issue Jul 23, 2024 · 1 comment
Open
3 tasks done

[Bug]: UserWarning: NWBFile not found within the configuration for core #1939

rly opened this issue Jul 23, 2024 · 1 comment
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@mavaylon1
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category: bug errors in the code or code behavior priority: low alternative solution already working and/or relevant to only specific user(s) topic: testing issues related to testing
Milestone
3.0

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@rly
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rly commented Jul 23, 2024 •
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What happened?

When linkml is installed, the test suite generates a few unexpected warnings. See https://github.com/NeurodataWithoutBorders/pynwb/actions/runs/10053028713/job/27828470283

I am not sure why they are being generated or if this might appear for typical users.

Steps to Reproduce

Run test suite with linkml installed and no configuration file

Traceback

/home/runner/work/pynwb/pynwb/.tox/py311-optional/lib/python3.11/site-packages/hdmf/container.py:142: UserWarning: NWBFile not found within the configuration for core
  warn(msg)

Operating System

macOS

Python Executable

Conda

Python Version

3.11

Package Versions

No response

Code of Conduct
@rly rly added category: bug errors in the code or code behavior topic: testing issues related to testing priority: low alternative solution already working and/or relevant to only specific user(s) labels Jul 23, 2024
@rly rly added this to the 2.9.0 milestone Jul 23, 2024
@mavaylon1
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Sure thing

@rly rly modified the milestones: 2.9.0, Next Major Release - 3.0 Sep 5, 2024
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@mavaylon1 mavaylon1

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category: bug errors in the code or code behavior priority: low alternative solution already working and/or relevant to only specific user(s) topic: testing issues related to testing
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Milestone
3.0
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@rly @mavaylon1