DESCRIPTION

Package: GeoMxWorkflows
Title: GeoMx Digital Spatial Profiler (DSP) data analysis workflows
Description: Workflows for use with NanoString Technologies GeoMx Technology.  Package provides bioconductor focused workflows for leveraging existing packages (e.g. GeomxTools) to process, QC, and analyze the data.
Version: 1.9.1
Encoding: UTF-8
Authors@R: c(person("Maddy", "Griswold", email = "mgriswold@nanostring.com", role = c("cre", "aut")),
             person("Jason", "Reeves", role = c("aut")), 
             person("Prajan", "Divakar", email = "pdivakar@nanostring.com", role = c("aut")),
             person("Nicole", "Ortogero", email = "nortogero@nanostring.com", role = c("aut")),
             person("Zhi", "Yang", role = c("aut")),
             person("Stephanie", "Zimmerman", role = c("aut")),
             person("Rona", "Vitancol", email = "rvitancol@nanostring.com", role = c("aut")),
             person("David", "Henderson", role = c("aut")))
Depends: R (>= 4.0), NanoStringNCTools, GeomxTools
Imports: Biobase, S4Vectors, rjson, readxl, EnvStats, dplyr, reshape2,
         methods, utils, stats, data.table, outliers, BiocGenerics, ggplot2, 
         ggrepel, ggforce, cowplot, scales, umap, Rtsne, pheatmap, BiocStyle,
         networkD3
Suggests: 
    rmarkdown,
    knitr
License: MIT
BiocType: Workflow
biocViews: GeneExpressionWorkflow, ImmunoOncologyWorkflow, SpatialWorkflow
VignetteEngine: knitr::rmarkdown
VignetteBuilder: knitr
RoxygenNote: 7.2.3
Config/testthat/edition: 3