From 90992fc96960c9643fa59bfeadc6286b90aab505 Mon Sep 17 00:00:00 2001 From: Avantika Lal Date: Wed, 4 Aug 2021 19:40:38 -0700 Subject: [PATCH] Update README.md --- README.md | 24 ++++++++++++------------ 1 file changed, 12 insertions(+), 12 deletions(-) diff --git a/README.md b/README.md index 284b6c6..302d0d5 100644 --- a/README.md +++ b/README.md @@ -125,18 +125,18 @@ We report the runtime of these notebooks on various GCP instances below. All run | Step | CPU
n1-highmem-64
64 vCPUs | GPU
n1-highmem-16
T4 16 GB GPU
(Acceleration) | GPU
n1-highmem-16
Tesla V100 16 GB GPU
(Acceleration) | GPU
a2-highgpu-1g
Tesla A100 40GB GPU
(Acceleration) | |------------------------------|---------------------------|----------------------------|-------------------|--------------| -| Data load + Preprocessing | 1120 | 1121 (1x) | 967 (x) | 475 (2.4x) | -| PCA | 44 | 44 (1x) | 43 (x) | 17.8 (2.5x) | -| t-SNE | 6509 | 189 (34x) | 50 (x) | 37 (176x) | -| k-means (single iteration) | 148 | 12.7 (12x) | 2.6 (x) | 2 (74x) | -| KNN | 154 | (x) | 92 (x) | 62 (2.5x) | -| UMAP | 2571 | (x) | 32 (x) | 21 (122x) | -| Louvain clustering | 1153 | (x) | 3.9 (x) | 2.4 (480x) | -| Leiden clustering | 6345 | (x) | 2.7 (x) | 1.7 (3732x) | -| Re-analysis of subgroup | 255 | (x) | 15 (x) | 17.9 (14.2x) | -| End-to-end notebook run | 18338 | | 1265 | 686 | -| Price ($/hr) | 3.786 | 1.296 | 5.906 | 3.673 | -| Total cost ($) | 19.285 | | | 0.700 | +| Data load + Preprocessing | 1120 | 1121 (1x) | 967 (1.2x) | 475 (2.4x) | +| PCA | 44 | 45 (1x) | 43 (1x) | 17.8 (2.5x) | +| t-SNE | 6509 | 196 (33x) | 50 (130x) | 37 (176x) | +| k-means (single iteration) | 148 | 12.7 (12x) | 2.6 (57x) | 2 (74x) | +| KNN | 154 | 141 (1.1x) | 92 (1.7x) | 62 (2.5x) | +| UMAP | 2571 | 146 (18x) | 32 (80x) | 21 (122x) | +| Louvain clustering | 1153 | 6.1 (189x) | 3.9 (296x) | 2.4 (480x) | +| Leiden clustering | 6345 | 5.1 (1244x) | 2.7 (2350x) | 1.7 (3732x) | +| Re-analysis of subgroup | 255 | 19.2 (13x) | 15 (17x) | 17.9 (14.2x) | +| End-to-end notebook run | 18338 | 1759 | 1265 | 686 | +| Price ($/hr) | 3.786 | 1.296 | 5.906 | 3.673 | +| Total cost ($) | 19.285 | 0.633 | 2.075 | 0.700 | ## Example 3: GPU-based Interactive Visualization of 70,000 Human Lung Cells (beta version)